miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 27466 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 27516 0.67 0.599488
Target:  5'- -cCGGC-GCGCCcGC-CCGCCGccGCCGc -3'
miRNA:   3'- guGCCGuCGCGGaCGaGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 27569 0.67 0.615304
Target:  5'- -cCGGCccGGCGCCgcgGCcccgcccccggggCCGCCGGCCc -3'
miRNA:   3'- guGCCG--UCGCGGa--CGa------------GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 27672 0.71 0.357388
Target:  5'- gGCGGCuGGCGCC-GCgugCCGCCGGggcCCAg -3'
miRNA:   3'- gUGCCG-UCGCGGaCGa--GGUGGCU---GGU- -5'
21488 5' -61.6 NC_004812.1 + 27706 0.68 0.540899
Target:  5'- aCACGcCGGCGCC--CUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCcGUCGCGGacGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 28002 0.7 0.397071
Target:  5'- -uCGGCGGCGCCUcccccgccccGC-CCGCCugGACCGa -3'
miRNA:   3'- guGCCGUCGCGGA----------CGaGGUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 28151 0.67 0.589631
Target:  5'- gGCGcGCAGgGCgUGCUCCugCucuCCAc -3'
miRNA:   3'- gUGC-CGUCgCGgACGAGGugGcu-GGU- -5'
21488 5' -61.6 NC_004812.1 + 28547 0.67 0.619264
Target:  5'- aGCGGCccgaccucgGGCGCCgcgaUGUUCgGCCGGCa- -3'
miRNA:   3'- gUGCCG---------UCGCGG----ACGAGgUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 28657 0.68 0.535134
Target:  5'- cCGCGGCGaggcgcacucgcaccGCGCCUGCgcgcgCUggggGCUGGCCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGa----GG----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 29313 0.66 0.636104
Target:  5'- -cCGGCAGCGCgCcaccguuuuccuggUGCcCCGCCG-CCAc -3'
miRNA:   3'- guGCCGUCGCG-G--------------ACGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 29599 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 30783 0.69 0.448266
Target:  5'- -cCGGCccCGCCUGCggggCCGCgGGCCGa -3'
miRNA:   3'- guGCCGucGCGGACGa---GGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 30827 0.7 0.412876
Target:  5'- gCAgGGCGGCGCCagGCgCCGCCcgggggcgcgcccGGCCAu -3'
miRNA:   3'- -GUgCCGUCGCGGa-CGaGGUGG-------------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 31380 0.68 0.557341
Target:  5'- uGCGuGCGcacGCGCCUGCUgcccgaacucacggCCGCCGcgGCCGg -3'
miRNA:   3'- gUGC-CGU---CGCGGACGA--------------GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 31618 0.66 0.678577
Target:  5'- gGCGuCGGCGCCgGCgcggUCGCCGGCgGg -3'
miRNA:   3'- gUGCcGUCGCGGaCGa---GGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 31833 0.66 0.638085
Target:  5'- cCGCGGgAccagcgagaccgaGCGCCgGCUCCACa-GCCAg -3'
miRNA:   3'- -GUGCCgU-------------CGCGGaCGAGGUGgcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 31922 0.67 0.619264
Target:  5'- cCACGaGCGaccGCGCCgcucGCUCC-CCGggGCCAg -3'
miRNA:   3'- -GUGC-CGU---CGCGGa---CGAGGuGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 31991 0.67 0.619264
Target:  5'- cCGCGGCAGgucCGCCacggagGCggggCCgaACCGGCCGc -3'
miRNA:   3'- -GUGCCGUC---GCGGa-----CGa---GG--UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 32118 0.68 0.52177
Target:  5'- gGgGGCGGCGCCgcggggGCUCCuccCCG-CCc -3'
miRNA:   3'- gUgCCGUCGCGGa-----CGAGGu--GGCuGGu -5'
21488 5' -61.6 NC_004812.1 + 32150 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.