miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 152421 0.66 0.639076
Target:  5'- cCGCGGgGGCGCCcucgGCgUCCACgUGGCgGg -3'
miRNA:   3'- -GUGCCgUCGCGGa---CG-AGGUG-GCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 152363 0.72 0.30666
Target:  5'- cCGCGGCgGGCGCCgccGCcgCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCG-UCGCGGa--CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 152020 0.78 0.130993
Target:  5'- gCGCGGCAguacgcccucaucacGCGCCUGCUCUucgcgcCCGACCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGAGGu-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151915 0.66 0.66775
Target:  5'- gCGCGGCGG-GCCgggggcGCUCCccucggcGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCgCGGa-----CGAGG-------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 151760 0.7 0.439478
Target:  5'- uCACGGCcGCGCCg---CCGCgGGCCGu -3'
miRNA:   3'- -GUGCCGuCGCGGacgaGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151709 0.72 0.313557
Target:  5'- aGCGGCGGCGCgC-GCgcgCCGCCGugGCCGg -3'
miRNA:   3'- gUGCCGUCGCG-GaCGa--GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 151578 0.67 0.57001
Target:  5'- cCGCGGCGcugcccCGCCUGCcgccCCACCuGCCGc -3'
miRNA:   3'- -GUGCCGUc-----GCGGACGa---GGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151097 0.66 0.678577
Target:  5'- gACGGCGGggaCGCCUuccccGCggCCGCCGccGCCGc -3'
miRNA:   3'- gUGCCGUC---GCGGA-----CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 150874 0.66 0.678577
Target:  5'- cCugGGCGGCGCCcgGCgcccuccucCCGCggcaGACCc -3'
miRNA:   3'- -GugCCGUCGCGGa-CGa--------GGUGg---CUGGu -5'
21488 5' -61.6 NC_004812.1 + 150696 0.73 0.267719
Target:  5'- --gGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- gugCCGUCGCGGa-----CGAGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 150599 0.69 0.466128
Target:  5'- aCGgGGCGGCGCCgccGCg-CGCCGACg- -3'
miRNA:   3'- -GUgCCGUCGCGGa--CGagGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 150396 0.69 0.45715
Target:  5'- gGCGGCAGgGgCgGCgUCCGCgGGCCGc -3'
miRNA:   3'- gUGCCGUCgCgGaCG-AGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 150316 0.69 0.475196
Target:  5'- -cCGGgGGCGCC-GCUCCcCCuGGCCGu -3'
miRNA:   3'- guGCCgUCGCGGaCGAGGuGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 150262 0.67 0.609368
Target:  5'- gGCGGC-GCGCCUGCcgCCcCCuGCUg -3'
miRNA:   3'- gUGCCGuCGCGGACGa-GGuGGcUGGu -5'
21488 5' -61.6 NC_004812.1 + 149759 0.67 0.599488
Target:  5'- -cCGGCGG-GCC-GCcUCGCCGACCGc -3'
miRNA:   3'- guGCCGUCgCGGaCGaGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 149020 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 148750 0.68 0.512304
Target:  5'- gCGCGG-GGCGCC-GCUaCgACCGACCc -3'
miRNA:   3'- -GUGCCgUCGCGGaCGA-GgUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 148546 0.66 0.668736
Target:  5'- gCGCGGCGGgGUC-GCgg-GCCGGCCGg -3'
miRNA:   3'- -GUGCCGUCgCGGaCGaggUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 148292 0.73 0.267105
Target:  5'- gGCGGCGGCGCCggcccgcUGCUgcgcUCGCUGGCCu -3'
miRNA:   3'- gUGCCGUCGCGG-------ACGA----GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 148089 0.68 0.539937
Target:  5'- cCGCGGCgaccgggauaaaaGGCaGCCggcucggGCggCCGCCGGCCGc -3'
miRNA:   3'- -GUGCCG-------------UCG-CGGa------CGa-GGUGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.