miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 22372 0.7 0.412035
Target:  5'- aCGCGGCaaagcgcgccgccAGCGUCUGgguaaaaCUCCGCCGACa- -3'
miRNA:   3'- -GUGCCG-------------UCGCGGAC-------GAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 129304 0.7 0.412876
Target:  5'- gCACGGCGGCgacggcgGCCUcgGCgCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-------CGGA--CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 30827 0.7 0.412876
Target:  5'- gCAgGGCGGCGCCagGCgCCGCCcgggggcgcgcccGGCCAu -3'
miRNA:   3'- -GUgCCGUCGCGGa-CGaGGUGG-------------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 43577 0.7 0.413719
Target:  5'- --aGGgGGCGCCUGaCgucaaCGCCGGCCAg -3'
miRNA:   3'- gugCCgUCGCGGAC-Gag---GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 98313 0.7 0.413719
Target:  5'- -cCGGCGGCGCgCgggugcugGCUCgcguaCGCCGACCGg -3'
miRNA:   3'- guGCCGUCGCG-Ga-------CGAG-----GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 129221 0.7 0.421349
Target:  5'- gGCGGCGGCGCCgGCggagCgCACCuggcgcgGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGaCGa---G-GUGG-------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 20161 0.7 0.422202
Target:  5'- gCGCGGauuCGCCUGCggugCCGCCgGGCCGc -3'
miRNA:   3'- -GUGCCgucGCGGACGa---GGUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 153511 0.7 0.397072
Target:  5'- -uCGGCGGCGCCUcccccgccccGC-CCGCCugGACCGa -3'
miRNA:   3'- guGCCGUCGCGGA----------CGaGGUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 16205 0.7 0.397072
Target:  5'- gCGCGGCGgacccgggccgcGCGCCggagGCggagCCGgCCGGCCAg -3'
miRNA:   3'- -GUGCCGU------------CGCGGa---CGa---GGU-GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 79461 0.71 0.388911
Target:  5'- gCGCGGCGGCgggggcccGCCcgGcCUCCucACCGACCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa-C-GAGG--UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 100364 0.71 0.35586
Target:  5'- cCACGGUuccGGCGCCcgccgccgggggGCgcgaggCCACCGGCCGg -3'
miRNA:   3'- -GUGCCG---UCGCGGa-----------CGa-----GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 12520 0.71 0.357388
Target:  5'- gUACGGCAGCGgggacuCCUccagcaGCUCCGCCaGGCCc -3'
miRNA:   3'- -GUGCCGUCGC------GGA------CGAGGUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 153180 0.71 0.357388
Target:  5'- gGCGGCuGGCGCC-GCgugCCGCCGGggcCCAg -3'
miRNA:   3'- gUGCCG-UCGCGGaCGa--GGUGGCU---GGU- -5'
21488 5' -61.6 NC_004812.1 + 19906 0.71 0.357388
Target:  5'- aCGCGGCGgcccGCGCC-GCcgCCACCGcGCCGg -3'
miRNA:   3'- -GUGCCGU----CGCGGaCGa-GGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 21440 0.71 0.359689
Target:  5'- aGCGGCGGCagaggaggccgguGaCCUGCgagaacugggcgggCCACCGACCGc -3'
miRNA:   3'- gUGCCGUCG-------------C-GGACGa-------------GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 110514 0.71 0.368215
Target:  5'- gGCGuGCgGGCGCCUGCUgCCggucuucguggucccGCCGGCCu -3'
miRNA:   3'- gUGC-CG-UCGCGGACGA-GG---------------UGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 63959 0.71 0.372923
Target:  5'- cCGCGuGUAcacGUGCCUGCUgcgccUCGCCGGCCAg -3'
miRNA:   3'- -GUGC-CGU---CGCGGACGA-----GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 140652 0.71 0.380062
Target:  5'- gCGCGGCGGCGCCaacGCgCCGCCuacgucuacgcguGACCc -3'
miRNA:   3'- -GUGCCGUCGCGGa--CGaGGUGG-------------CUGGu -5'
21488 5' -61.6 NC_004812.1 + 130407 0.71 0.388911
Target:  5'- cCACGGCGgcgcgcgcGCGCCgccGCUCgCugCGGCCc -3'
miRNA:   3'- -GUGCCGU--------CGCGGa--CGAG-GugGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 74984 0.7 0.422202
Target:  5'- gACGcGCcGCGCgUGCUCCAgccagUCGACCGc -3'
miRNA:   3'- gUGC-CGuCGCGgACGAGGU-----GGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.