miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 18365 0.73 0.267719
Target:  5'- -cCGGCGGCGCCggGC-CCGCgGGCCc -3'
miRNA:   3'- guGCCGUCGCGGa-CGaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 67212 0.74 0.248056
Target:  5'- gGCGGCGGCGCCcgcggGCUCCcuccucucgagggaGCCG-CCGg -3'
miRNA:   3'- gUGCCGUCGCGGa----CGAGG--------------UGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 43867 0.76 0.192423
Target:  5'- gCGCGGCGGCGCCgccgcgcgGUUCgCGCCcGGCCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa-------CGAG-GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 26512 0.78 0.130993
Target:  5'- gCGCGGCAguacgcccucaucacGCGCCUGCUCUucgcgcCCGACCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGAGGu-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 146613 0.72 0.334949
Target:  5'- gGCGGCAGCaCCUcCUCCACgCGACa- -3'
miRNA:   3'- gUGCCGUCGcGGAcGAGGUG-GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 6016 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 54795 0.74 0.238401
Target:  5'- aGCGGgGGCGCCgcgGUUCCugccguCCGACCu -3'
miRNA:   3'- gUGCCgUCGCGGa--CGAGGu-----GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 90495 0.78 0.129685
Target:  5'- gGCGGCGGCGCCUGCgacccCCGCCuGCUc -3'
miRNA:   3'- gUGCCGUCGCGGACGa----GGUGGcUGGu -5'
21488 5' -61.6 NC_004812.1 + 111337 0.73 0.293217
Target:  5'- cCGCGGCGGCGCCgaccCCGCgGGCCc -3'
miRNA:   3'- -GUGCCGUCGCGGacgaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 99704 0.82 0.075869
Target:  5'- uGCGGCGGCGCCUGCgCCcaggGCUGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGACGaGG----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 79477 0.74 0.244042
Target:  5'- gAC-GCGGCGCCUggccgaggacgcGCUCCACCaGGCCAa -3'
miRNA:   3'- gUGcCGUCGCGGA------------CGAGGUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 13001 0.73 0.286669
Target:  5'- gACgGGCGGCGCUUGCUCCGucggggcgacuCCGGCgGg -3'
miRNA:   3'- gUG-CCGUCGCGGACGAGGU-----------GGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 27374 0.75 0.222131
Target:  5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 25185 0.75 0.211817
Target:  5'- cCGgGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- -GUgCCGUCGCGGa-----CGAGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 32150 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 88625 0.77 0.150629
Target:  5'- gCAUGGCGGCGCCccagUGCgCCGCCGGCa- -3'
miRNA:   3'- -GUGCCGUCGCGG----ACGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 8562 0.71 0.357388
Target:  5'- aAgGGCccuGCGCCUGCagagCC-CCGACCGg -3'
miRNA:   3'- gUgCCGu--CGCGGACGa---GGuGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 55284 0.72 0.342313
Target:  5'- uGCGGCgAGCGCCUGCa-CGCCGAg-- -3'
miRNA:   3'- gUGCCG-UCGCGGACGagGUGGCUggu -5'
21488 5' -61.6 NC_004812.1 + 26201 0.72 0.313557
Target:  5'- aGCGGCGGCGCgC-GCgcgCCGCCGugGCCGg -3'
miRNA:   3'- gUGCCGUCGCG-GaCGa--GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 133909 0.73 0.29988
Target:  5'- uCGCGGCGGgGCCU-CUacUCGCCGGCCu -3'
miRNA:   3'- -GUGCCGUCgCGGAcGA--GGUGGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.