Results 41 - 60 of 420 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 72749 | 0.72 | 0.320571 |
Target: 5'- gGCGGCAGCGCCgccccccgccGCUCCccccggagaCGGCCGg -3' miRNA: 3'- gUGCCGUCGCGGa---------CGAGGug-------GCUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 54795 | 0.74 | 0.238401 |
Target: 5'- aGCGGgGGCGCCgcgGUUCCugccguCCGACCu -3' miRNA: 3'- gUGCCgUCGCGGa--CGAGGu-----GGCUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 90495 | 0.78 | 0.129685 |
Target: 5'- gGCGGCGGCGCCUGCgacccCCGCCuGCUc -3' miRNA: 3'- gUGCCGUCGCGGACGa----GGUGGcUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 81670 | 0.72 | 0.313557 |
Target: 5'- cCGCGGC-GCGCgacgGCUCCcCCGACCc -3' miRNA: 3'- -GUGCCGuCGCGga--CGAGGuGGCUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 99704 | 0.82 | 0.075869 |
Target: 5'- uGCGGCGGCGCCUGCgCCcaggGCUGGCCGc -3' miRNA: 3'- gUGCCGUCGCGGACGaGG----UGGCUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 73924 | 0.7 | 0.439478 |
Target: 5'- gGCGcccaGCGGCGCCUGCUCgCccuGCUGcACCAg -3' miRNA: 3'- gUGC----CGUCGCGGACGAG-G---UGGC-UGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 88625 | 0.77 | 0.150629 |
Target: 5'- gCAUGGCGGCGCCccagUGCgCCGCCGGCa- -3' miRNA: 3'- -GUGCCGUCGCGG----ACGaGGUGGCUGgu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 74999 | 0.7 | 0.422202 |
Target: 5'- gGCGGCcaGGgGCgUGCU-CGCCGACCu -3' miRNA: 3'- gUGCCG--UCgCGgACGAgGUGGCUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 118280 | 0.7 | 0.413719 |
Target: 5'- -gUGGCAGCGCCgGCUcgcCCACgGGCgCAu -3' miRNA: 3'- guGCCGUCGCGGaCGA---GGUGgCUG-GU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 128698 | 0.7 | 0.397071 |
Target: 5'- gGCGG-GGCGCCcgGuCUCC-CCGACCGg -3' miRNA: 3'- gUGCCgUCGCGGa-C-GAGGuGGCUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 87733 | 0.71 | 0.365099 |
Target: 5'- gGCGGCgcgGGCGCCgGggCCGCgGACCGa -3' miRNA: 3'- gUGCCG---UCGCGGaCgaGGUGgCUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 8562 | 0.71 | 0.357388 |
Target: 5'- aAgGGCccuGCGCCUGCagagCC-CCGACCGg -3' miRNA: 3'- gUgCCGu--CGCGGACGa---GGuGGCUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 55284 | 0.72 | 0.342313 |
Target: 5'- uGCGGCgAGCGCCUGCa-CGCCGAg-- -3' miRNA: 3'- gUGCCG-UCGCGGACGagGUGGCUggu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 26855 | 0.72 | 0.30666 |
Target: 5'- cCGCGGCgGGCGCCgccGCcgCCGCCGccGCCGc -3' miRNA: 3'- -GUGCCG-UCGCGGa--CGa-GGUGGC--UGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 111337 | 0.73 | 0.293217 |
Target: 5'- cCGCGGCGGCGCCgaccCCGCgGGCCc -3' miRNA: 3'- -GUGCCGUCGCGGacgaGGUGgCUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 18365 | 0.73 | 0.267719 |
Target: 5'- -cCGGCGGCGCCggGC-CCGCgGGCCc -3' miRNA: 3'- guGCCGUCGCGGa-CGaGGUGgCUGGu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 67212 | 0.74 | 0.248056 |
Target: 5'- gGCGGCGGCGCCcgcggGCUCCcuccucucgagggaGCCG-CCGg -3' miRNA: 3'- gUGCCGUCGCGGa----CGAGG--------------UGGCuGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 27374 | 0.75 | 0.222131 |
Target: 5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3' miRNA: 3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 25185 | 0.75 | 0.211817 |
Target: 5'- cCGgGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3' miRNA: 3'- -GUgCCGUCGCGGa-----CGAGGUGGcUGGU- -5' |
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21488 | 5' | -61.6 | NC_004812.1 | + | 32150 | 0.76 | 0.174603 |
Target: 5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3' miRNA: 3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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