miRNA display CGI


Results 61 - 80 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 55284 0.72 0.342313
Target:  5'- uGCGGCgAGCGCCUGCa-CGCCGAg-- -3'
miRNA:   3'- gUGCCG-UCGCGGACGagGUGGCUggu -5'
21488 5' -61.6 NC_004812.1 + 43532 0.71 0.357388
Target:  5'- cCGCGGCGGUGUCgcgGCUcgcugCCGCCGcgGCCGa -3'
miRNA:   3'- -GUGCCGUCGCGGa--CGA-----GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 23512 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 43749 0.76 0.178915
Target:  5'- uCGCGGCGGCGCCgGUUUCGuCUGGCCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGGU-GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 29599 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 54607 0.75 0.222131
Target:  5'- uCGCGGCGGCGCC-GCgagUCGCgCGACCc -3'
miRNA:   3'- -GUGCCGUCGCGGaCGa--GGUG-GCUGGu -5'
21488 5' -61.6 NC_004812.1 + 27466 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 13001 0.73 0.286669
Target:  5'- gACgGGCGGCGCUUGCUCCGucggggcgacuCCGGCgGg -3'
miRNA:   3'- gUG-CCGUCGCGGACGAGGU-----------GGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 6016 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 54770 0.72 0.313557
Target:  5'- aCACGGCGGCGCUcGUg--GCCGACCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 49910 0.69 0.49081
Target:  5'- gCACGcGCAGCGacgGCUggaucgccaccgucCCGCCGGCCGg -3'
miRNA:   3'- -GUGC-CGUCGCggaCGA--------------GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 84111 0.69 0.475196
Target:  5'- gGCGGCGGCGC--GCcCC-CCGACCc -3'
miRNA:   3'- gUGCCGUCGCGgaCGaGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 4899 0.71 0.388911
Target:  5'- cCACGGCGgcgcgcgcGCGCCgccGCUCgCugCGGCCc -3'
miRNA:   3'- -GUGCCGU--------CGCGGa--CGAG-GugGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 28002 0.7 0.397071
Target:  5'- -uCGGCGGCGCCUcccccgccccGC-CCGCCugGACCGa -3'
miRNA:   3'- guGCCGUCGCGGA----------CGaGGUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 74999 0.7 0.422202
Target:  5'- gGCGGCcaGGgGCgUGCU-CGCCGACCu -3'
miRNA:   3'- gUGCCG--UCgCGgACGAgGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 73924 0.7 0.439478
Target:  5'- gGCGcccaGCGGCGCCUGCUCgCccuGCUGcACCAg -3'
miRNA:   3'- gUGC----CGUCGCGGACGAG-G---UGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 46910 0.69 0.447383
Target:  5'- gCGCGGCGGcCGCCgccgcgGCggacacaUCCGCCG-CCGa -3'
miRNA:   3'- -GUGCCGUC-GCGGa-----CG-------AGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 101142 0.69 0.448266
Target:  5'- uCGCGGC-GCGCgUgcGCUUCugCGACCu -3'
miRNA:   3'- -GUGCCGuCGCGgA--CGAGGugGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 58209 0.69 0.45715
Target:  5'- aCGCuGCGGCGCCgccccGCggCCGCCGcGCCGc -3'
miRNA:   3'- -GUGcCGUCGCGGa----CGa-GGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 34964 0.69 0.466128
Target:  5'- cCGCaGGCcGCuCCUcCUCCGCCGGCCGc -3'
miRNA:   3'- -GUG-CCGuCGcGGAcGAGGUGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.