miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 144958 0.7 0.397071
Target:  5'- --aGGCcgaGGCGCC-GCUCC-CCGACCc -3'
miRNA:   3'- gugCCG---UCGCGGaCGAGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 3713 0.7 0.421349
Target:  5'- gGCGGCGGCGCCgGCggagCgCACCuggcgcgGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGaCGa---G-GUGG-------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 10751 0.7 0.429926
Target:  5'- gGCGGCGacGCGCCUGCgcgagacUCCGuccccgggcCCGGCCu -3'
miRNA:   3'- gUGCCGU--CGCGGACG-------AGGU---------GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 13295 0.7 0.439478
Target:  5'- gCGCGGCggGGCGUCcGCgucUCCGCCGcGCCGg -3'
miRNA:   3'- -GUGCCG--UCGCGGaCG---AGGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 47289 0.69 0.448266
Target:  5'- gCGCGGCGcCGCCUccaGCgCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGUcGCGGA---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 58209 0.69 0.45715
Target:  5'- aCGCuGCGGCGCCgccccGCggCCGCCGcGCCGc -3'
miRNA:   3'- -GUGcCGUCGCGGa----CGa-GGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 34964 0.69 0.466128
Target:  5'- cCGCaGGCcGCuCCUcCUCCGCCGGCCGc -3'
miRNA:   3'- -GUG-CCGuCGcGGAcGAGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 54770 0.72 0.313557
Target:  5'- aCACGGCGGCGCUcGUg--GCCGACCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 6016 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 13001 0.73 0.286669
Target:  5'- gACgGGCGGCGCUUGCUCCGucggggcgacuCCGGCgGg -3'
miRNA:   3'- gUG-CCGUCGCGGACGAGGU-----------GGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 124262 0.68 0.502909
Target:  5'- gCGCGGCGGCGCCcccGuCUCCggagagcuAgCGGCCGg -3'
miRNA:   3'- -GUGCCGUCGCGGa--C-GAGG--------UgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 148750 0.68 0.512304
Target:  5'- gCGCGG-GGCGCC-GCUaCgACCGACCc -3'
miRNA:   3'- -GUGCCgUCGCGGaCGA-GgUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 48568 0.68 0.52177
Target:  5'- uCGCGaaCAGCGCCgucacCUCCACCGGCg- -3'
miRNA:   3'- -GUGCc-GUCGCGGac---GAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 78081 0.68 0.531303
Target:  5'- uGCGGCAGCcugaccgagCUGCUCgGCCG-CCAc -3'
miRNA:   3'- gUGCCGUCGcg-------GACGAGgUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 94117 0.68 0.531303
Target:  5'- -cCGGCgGGCGCgUGgUCCgcGCCGGCCc -3'
miRNA:   3'- guGCCG-UCGCGgACgAGG--UGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 23512 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 43749 0.76 0.178915
Target:  5'- uCGCGGCGGCGCCgGUUUCGuCUGGCCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGGU-GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 29599 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 54607 0.75 0.222131
Target:  5'- uCGCGGCGGCGCC-GCgagUCGCgCGACCc -3'
miRNA:   3'- -GUGCCGUCGCGGaCGa--GGUG-GCUGGu -5'
21488 5' -61.6 NC_004812.1 + 27466 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.