miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 1790 0.66 0.678577
Target:  5'- gACGGgAGCGCgUGCaucgggCC-CCGGCUg -3'
miRNA:   3'- gUGCCgUCGCGgACGa-----GGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 59972 0.66 0.678577
Target:  5'- uCGC-GCGGCGCCgGCUCgUGgCGGCCGu -3'
miRNA:   3'- -GUGcCGUCGCGGaCGAG-GUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 33021 0.66 0.668736
Target:  5'- --gGGCGcGCGUgUGCUCgGCCG-CCGc -3'
miRNA:   3'- gugCCGU-CGCGgACGAGgUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 55658 0.66 0.668736
Target:  5'- cCGCGGCGGCGC--GCcCCGCCacgucGGCCc -3'
miRNA:   3'- -GUGCCGUCGCGgaCGaGGUGG-----CUGGu -5'
21488 5' -61.6 NC_004812.1 + 10280 0.66 0.668736
Target:  5'- gACGGCGcGCGUUUGCcggCGCCGACg- -3'
miRNA:   3'- gUGCCGU-CGCGGACGag-GUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 50045 0.66 0.668736
Target:  5'- -cCGGCccgGGCGCCUccucccucaGCUCC-CCGGCg- -3'
miRNA:   3'- guGCCG---UCGCGGA---------CGAGGuGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 136517 0.66 0.668736
Target:  5'- gCGCGGC-GCGCUccuccgagGCgUCCGCUGGCUg -3'
miRNA:   3'- -GUGCCGuCGCGGa-------CG-AGGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 144970 0.66 0.668736
Target:  5'- gCGCGGCgAGCGUCUGgaCggagCGCCuGGCCGu -3'
miRNA:   3'- -GUGCCG-UCGCGGACgaG----GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 141592 0.66 0.668736
Target:  5'- -cCGGCcccugGGCGCCUGCcCCGuCCGcaACCu -3'
miRNA:   3'- guGCCG-----UCGCGGACGaGGU-GGC--UGGu -5'
21488 5' -61.6 NC_004812.1 + 148546 0.66 0.668736
Target:  5'- gCGCGGCGGgGUC-GCgg-GCCGGCCGg -3'
miRNA:   3'- -GUGCCGUCgCGGaCGaggUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 89868 0.66 0.668736
Target:  5'- --aGGcCGGCGCgCUGCUCCGaCGGCa- -3'
miRNA:   3'- gugCC-GUCGCG-GACGAGGUgGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 80892 0.66 0.668736
Target:  5'- --aGGUcGCGCCgGCUCgugagaACCGACCu -3'
miRNA:   3'- gugCCGuCGCGGaCGAGg-----UGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 75208 0.66 0.668736
Target:  5'- aCGCGGuCAGuCGauaCUGCgCCGCCuACCAg -3'
miRNA:   3'- -GUGCC-GUC-GCg--GACGaGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 133595 0.66 0.668736
Target:  5'- gGCGGUAGCGCgCcGUugUCgCGCCGACg- -3'
miRNA:   3'- gUGCCGUCGCG-GaCG--AG-GUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 103344 0.66 0.668736
Target:  5'- aGCuGGC-GCGCCUGCUCCaggucgcaACacaGGCCc -3'
miRNA:   3'- gUG-CCGuCGCGGACGAGG--------UGg--CUGGu -5'
21488 5' -61.6 NC_004812.1 + 117645 0.66 0.668736
Target:  5'- gCGCGGCGGgGUC-GCgg-GCCGGCCGg -3'
miRNA:   3'- -GUGCCGUCgCGGaCGaggUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151915 0.66 0.66775
Target:  5'- gCGCGGCGG-GCCgggggcGCUCCccucggcGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCgCGGa-----CGAGG-------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 121014 0.66 0.66775
Target:  5'- gCGCGGCGG-GCCgggggcGCUCCccucggcGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCgCGGa-----CGAGG-------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 80171 0.66 0.665778
Target:  5'- uCGCGGaCAGCGCCgcggGCUacgucaaggcgaccCgGCUGGCCc -3'
miRNA:   3'- -GUGCC-GUCGCGGa---CGA--------------GgUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 101964 0.66 0.665778
Target:  5'- cCGCGGCGGCgacccccguggugaGCCcGCgggCCucuCCGGCCc -3'
miRNA:   3'- -GUGCCGUCG--------------CGGaCGa--GGu--GGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.