miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 105130 0.66 0.949113
Target:  5'- aCCGCGCaGGgCUGCGgUCCGGgAACGa -3'
miRNA:   3'- -GGUGUGcCUgGACGUgGGGUUgUUGU- -5'
21492 3' -54.7 NC_004812.1 + 101331 0.66 0.949113
Target:  5'- aCCACGCGacccacagccuGGCCcaGCcCCCCAACAccGCGc -3'
miRNA:   3'- -GGUGUGC-----------CUGGa-CGuGGGGUUGU--UGU- -5'
21492 3' -54.7 NC_004812.1 + 49174 0.66 0.949113
Target:  5'- gUACGCGGACC---GCCUgGACAACc -3'
miRNA:   3'- gGUGUGCCUGGacgUGGGgUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 27767 0.66 0.949113
Target:  5'- cCCGCAgGGGCggGCGgCCCAGCc--- -3'
miRNA:   3'- -GGUGUgCCUGgaCGUgGGGUUGuugu -5'
21492 3' -54.7 NC_004812.1 + 97433 0.66 0.949113
Target:  5'- aCgGCgACGGcaucaaggccuGCCUGCGCCCgucggacggcgcCAGCGGCAu -3'
miRNA:   3'- -GgUG-UGCC-----------UGGACGUGGG------------GUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 71041 0.66 0.949113
Target:  5'- gCCGCugGGGaggGCggccGCCCCuGCGGCGg -3'
miRNA:   3'- -GGUGugCCUggaCG----UGGGGuUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 151011 0.66 0.949113
Target:  5'- aCgACGCGG-CCUcGCaggACCCCGcCGACGg -3'
miRNA:   3'- -GgUGUGCCuGGA-CG---UGGGGUuGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 63387 0.66 0.949113
Target:  5'- -gGCGCgGGGCCUGCccGCgCCGACGGu- -3'
miRNA:   3'- ggUGUG-CCUGGACG--UGgGGUUGUUgu -5'
21492 3' -54.7 NC_004812.1 + 14667 0.66 0.949113
Target:  5'- gCGCcuuCGGGCCgUGcCACCCC-GCGGCc -3'
miRNA:   3'- gGUGu--GCCUGG-AC-GUGGGGuUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 11627 0.66 0.949113
Target:  5'- gCGCACGG-CCagGCGCUCCGuccaGACGc -3'
miRNA:   3'- gGUGUGCCuGGa-CGUGGGGUug--UUGU- -5'
21492 3' -54.7 NC_004812.1 + 53537 0.66 0.949113
Target:  5'- uCCACGgccucuCGGGCCU-CGCgCCCGAC-GCAg -3'
miRNA:   3'- -GGUGU------GCCUGGAcGUG-GGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 84868 0.66 0.949113
Target:  5'- cCgGCACGGucauCCUGgcccuccgcCACCCgAGCGACu -3'
miRNA:   3'- -GgUGUGCCu---GGAC---------GUGGGgUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 25503 0.66 0.949113
Target:  5'- aCgACGCGG-CCUcGCaggACCCCGcCGACGg -3'
miRNA:   3'- -GgUGUGCCuGGA-CG---UGGGGUuGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 10855 0.66 0.949113
Target:  5'- cCCGCGCGacGACCgacgaGCcCCCCGACccGCGg -3'
miRNA:   3'- -GGUGUGC--CUGGa----CGuGGGGUUGu-UGU- -5'
21492 3' -54.7 NC_004812.1 + 47329 0.66 0.949113
Target:  5'- gCGCGCaGGuagGCCUcugcggucGCGCCCC-GCAACAc -3'
miRNA:   3'- gGUGUG-CC---UGGA--------CGUGGGGuUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 63401 0.66 0.949113
Target:  5'- gCCugGuCGGACUUuuucaGCGCCCgCGACAGg- -3'
miRNA:   3'- -GGugU-GCCUGGA-----CGUGGG-GUUGUUgu -5'
21492 3' -54.7 NC_004812.1 + 17013 0.66 0.949113
Target:  5'- gCUGCACuucguccuGGACg-GCuGCCCCGACGACGc -3'
miRNA:   3'- -GGUGUG--------CCUGgaCG-UGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 19430 0.66 0.949113
Target:  5'- gCCGCGCGGccgcaggaccGCCUcccGCACCUCGAauACGu -3'
miRNA:   3'- -GGUGUGCC----------UGGA---CGUGGGGUUguUGU- -5'
21492 3' -54.7 NC_004812.1 + 132979 0.66 0.949113
Target:  5'- gUCACGCGGACgcccguCUGgGCgCCCGGCcACu -3'
miRNA:   3'- -GGUGUGCCUG------GACgUG-GGGUUGuUGu -5'
21492 3' -54.7 NC_004812.1 + 105968 0.66 0.949113
Target:  5'- gUCGC-CGGGCCccGC-CCCCcACAGCc -3'
miRNA:   3'- -GGUGuGCCUGGa-CGuGGGGuUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.