miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 78800 0.66 0.833818
Target:  5'- gGGCGUGGACG-CG-GU--CGCGAGg- -3'
miRNA:   3'- -UCGCACCUGCuGCaCGacGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 144107 0.66 0.833818
Target:  5'- uGcCGU--ACGugGUGCUGCGCGAc-- -3'
miRNA:   3'- uC-GCAccUGCugCACGACGCGCUcac -5'
21492 5' -58.1 NC_004812.1 + 20290 0.66 0.833818
Target:  5'- gGGgGUGGGCGGCGcGCcgGCGCa---- -3'
miRNA:   3'- -UCgCACCUGCUGCaCGa-CGCGcucac -5'
21492 5' -58.1 NC_004812.1 + 149085 0.66 0.833818
Target:  5'- gGGCGggagGGGCGGCGcgccGCgggGCGgGGGUu -3'
miRNA:   3'- -UCGCa---CCUGCUGCa---CGa--CGCgCUCAc -5'
21492 5' -58.1 NC_004812.1 + 93116 0.66 0.833818
Target:  5'- cGGUGUcGGGCGGCGgcguCUGCGUGAcGUu -3'
miRNA:   3'- -UCGCA-CCUGCUGCac--GACGCGCU-CAc -5'
21492 5' -58.1 NC_004812.1 + 122443 0.66 0.833818
Target:  5'- cGGCGUcuccucGGGCGGCG-GggGCGCGGGc- -3'
miRNA:   3'- -UCGCA------CCUGCUGCaCgaCGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 94630 0.66 0.825569
Target:  5'- gGGCGuUGGgaccgGCGACGaggGCgcggGCGCGAGc- -3'
miRNA:   3'- -UCGC-ACC-----UGCUGCa--CGa---CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 42077 0.66 0.825569
Target:  5'- cAGCGacGGgGACGUGCUccGCuGCGAGUc -3'
miRNA:   3'- -UCGCacCUgCUGCACGA--CG-CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 107691 0.66 0.825569
Target:  5'- cAGCGUGGcgaccACGGCGUGgccCGCGAGc- -3'
miRNA:   3'- -UCGCACC-----UGCUGCACgacGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 64145 0.66 0.825569
Target:  5'- cGCGaucggGGACGGCGgcgcggcggGCUccGCGCGGGa- -3'
miRNA:   3'- uCGCa----CCUGCUGCa--------CGA--CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 45251 0.66 0.824735
Target:  5'- cAGC-UGGGCGACGaGCUGgggggccCGCGGGg- -3'
miRNA:   3'- -UCGcACCUGCUGCaCGAC-------GCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 113444 0.66 0.822222
Target:  5'- uAGCGUGGACGugcgucccgucucUGUGgaGCcGUGAGUa -3'
miRNA:   3'- -UCGCACCUGCu------------GCACgaCG-CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 72239 0.66 0.817151
Target:  5'- cGGCG-GGGCGucCGgucgGCggGCGCGAGa- -3'
miRNA:   3'- -UCGCaCCUGCu-GCa---CGa-CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 72974 0.66 0.817151
Target:  5'- cGCa-GGGCGGCGUcggcgccccGCUcGCGCGAGUc -3'
miRNA:   3'- uCGcaCCUGCUGCA---------CGA-CGCGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 59656 0.66 0.817151
Target:  5'- uGGUGUGGGCGcagGCGUGCcGCGUcuccaggucgcaGAGg- -3'
miRNA:   3'- -UCGCACCUGC---UGCACGaCGCG------------CUCac -5'
21492 5' -58.1 NC_004812.1 + 16513 0.66 0.817151
Target:  5'- gGGCGcggGGGCGAUGcGCUcacGCGUGGGa- -3'
miRNA:   3'- -UCGCa--CCUGCUGCaCGA---CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 94334 0.66 0.817151
Target:  5'- aGGUGUGcGGCG-CG-GcCUGCGCGGGg- -3'
miRNA:   3'- -UCGCAC-CUGCuGCaC-GACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 36153 0.66 0.817151
Target:  5'- uGGcCGUGG-CGGCGcaggGgUGCGCGGGg- -3'
miRNA:   3'- -UC-GCACCuGCUGCa---CgACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 21026 0.66 0.808569
Target:  5'- gGGgGUGcAUGGgGUgGCUGCGCGAGa- -3'
miRNA:   3'- -UCgCACcUGCUgCA-CGACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 57246 0.66 0.808569
Target:  5'- gAGCGUGGGCGG-GcGCUGgGgGGGg- -3'
miRNA:   3'- -UCGCACCUGCUgCaCGACgCgCUCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.