miRNA display CGI


Results 1 - 20 of 682 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21493 3' -60.1 NC_004812.1 + 136600 0.66 0.780081
Target:  5'- aCGC-UGGcgcgaAGGauGACGACGCCggGuCGCg -3'
miRNA:   3'- -GCGuACC-----UCCggCUGCUGCGGa-C-GCG- -5'
21493 3' -60.1 NC_004812.1 + 58061 0.66 0.780081
Target:  5'- gCGCGUGGAcuCCcuCGGCGCCcUGCGa -3'
miRNA:   3'- -GCGUACCUccGGcuGCUGCGG-ACGCg -5'
21493 3' -60.1 NC_004812.1 + 124454 0.66 0.780081
Target:  5'- gGCGgaccaacgGGcGGCCG-CGGCGCCgcccggGCGg -3'
miRNA:   3'- gCGUa-------CCuCCGGCuGCUGCGGa-----CGCg -5'
21493 3' -60.1 NC_004812.1 + 100574 0.66 0.780081
Target:  5'- gGCgGUGGcGGCCGuCGA-GCUgGCGCu -3'
miRNA:   3'- gCG-UACCuCCGGCuGCUgCGGaCGCG- -5'
21493 3' -60.1 NC_004812.1 + 77575 0.66 0.780081
Target:  5'- gGCGcGGAGGCC-ACGugGUaccgGCGg -3'
miRNA:   3'- gCGUaCCUCCGGcUGCugCGga--CGCg -5'
21493 3' -60.1 NC_004812.1 + 140848 0.66 0.780081
Target:  5'- uCGCccaGGGcccGGCUGACGGCGCggGCGg -3'
miRNA:   3'- -GCGua-CCU---CCGGCUGCUGCGgaCGCg -5'
21493 3' -60.1 NC_004812.1 + 112419 0.66 0.780081
Target:  5'- uCGCA--GAGGCgGugGcccccaGCGCC-GCGCa -3'
miRNA:   3'- -GCGUacCUCCGgCugC------UGCGGaCGCG- -5'
21493 3' -60.1 NC_004812.1 + 144930 0.66 0.780081
Target:  5'- cCGCAgcugcccGAGugccgcucGCCGGCgGACGCCccgUGCGCg -3'
miRNA:   3'- -GCGUac-----CUC--------CGGCUG-CUGCGG---ACGCG- -5'
21493 3' -60.1 NC_004812.1 + 48276 0.66 0.780081
Target:  5'- gCGC-UGGAGGCCcuggaGACGGcCGCg-GCGg -3'
miRNA:   3'- -GCGuACCUCCGG-----CUGCU-GCGgaCGCg -5'
21493 3' -60.1 NC_004812.1 + 155355 0.66 0.780081
Target:  5'- gGCGgaccaacgGGcGGCCG-CGGCGCCgcccggGCGg -3'
miRNA:   3'- gCGUa-------CCuCCGGCuGCUGCGGa-----CGCg -5'
21493 3' -60.1 NC_004812.1 + 56577 0.66 0.780081
Target:  5'- aCGCGcucGAGcGCggCGAUGGCGCC-GCGCg -3'
miRNA:   3'- -GCGUac-CUC-CG--GCUGCUGCGGaCGCG- -5'
21493 3' -60.1 NC_004812.1 + 11317 0.66 0.780081
Target:  5'- cCGCGgggcGGGGGCCgGugGGCuggGCCgacgGUGUg -3'
miRNA:   3'- -GCGUa---CCUCCGG-CugCUG---CGGa---CGCG- -5'
21493 3' -60.1 NC_004812.1 + 91068 0.66 0.780081
Target:  5'- gCGCGUcucgaagaccGGGGGCgaggGGgGGCGCCagggGCGCg -3'
miRNA:   3'- -GCGUA----------CCUCCGg---CUgCUGCGGa---CGCG- -5'
21493 3' -60.1 NC_004812.1 + 136468 0.66 0.780081
Target:  5'- cCGCGcGGGGGCgccaugGGCGACGCgggccucguCUGgGCg -3'
miRNA:   3'- -GCGUaCCUCCGg-----CUGCUGCG---------GACgCG- -5'
21493 3' -60.1 NC_004812.1 + 100405 0.66 0.780081
Target:  5'- gGCc-GGAGGUCGAUG-CGCC-GCGa -3'
miRNA:   3'- gCGuaCCUCCGGCUGCuGCGGaCGCg -5'
21493 3' -60.1 NC_004812.1 + 80022 0.66 0.780081
Target:  5'- --gGUGGGGaGCuCGACGGCcgaGCacaUGCGCg -3'
miRNA:   3'- gcgUACCUC-CG-GCUGCUG---CGg--ACGCG- -5'
21493 3' -60.1 NC_004812.1 + 16781 0.66 0.780081
Target:  5'- aCGCGUGGGgcGGCCGA-GGCGaCCaUG-GCc -3'
miRNA:   3'- -GCGUACCU--CCGGCUgCUGC-GG-ACgCG- -5'
21493 3' -60.1 NC_004812.1 + 17871 0.66 0.780081
Target:  5'- cCGCggGGGcgaccGGCCGGC-ACGCC-GCGg -3'
miRNA:   3'- -GCGuaCCU-----CCGGCUGcUGCGGaCGCg -5'
21493 3' -60.1 NC_004812.1 + 92564 0.66 0.780081
Target:  5'- gGCAcGGcccguGGCCGuCGuCGCCUG-GCu -3'
miRNA:   3'- gCGUaCCu----CCGGCuGCuGCGGACgCG- -5'
21493 3' -60.1 NC_004812.1 + 86555 0.66 0.779186
Target:  5'- uCGCGUGcGcccugcacAGGUCGGCGAgcgccccCGCCUGUccGCg -3'
miRNA:   3'- -GCGUAC-C--------UCCGGCUGCU-------GCGGACG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.