miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21493 5' -53.1 NC_004812.1 + 130303 0.66 0.988268
Target:  5'- cCCGuCGCGGuagcgggcguagaagGCGcCCGagGCCUcgucgGCGUCCa -3'
miRNA:   3'- -GGU-GUGCU---------------UGU-GGCagCGGA-----UGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 4795 0.66 0.988268
Target:  5'- cCCGuCGCGGuagcgggcguagaagGCGcCCGagGCCUcgucgGCGUCCa -3'
miRNA:   3'- -GGU-GUGCU---------------UGU-GGCagCGGA-----UGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 108215 0.66 0.987829
Target:  5'- gCGCACGAucuggaccuccagcuCGCCGg-GCCcggcggcgGCGUCCg -3'
miRNA:   3'- gGUGUGCUu--------------GUGGCagCGGa-------UGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 130820 0.66 0.98768
Target:  5'- gCUcCGCGAGCGCguCGUcCGCCgggGCG-CCg -3'
miRNA:   3'- -GGuGUGCUUGUG--GCA-GCGGa--UGCaGG- -5'
21493 5' -53.1 NC_004812.1 + 145372 0.66 0.98768
Target:  5'- -uGgACGAACACCGgaaCGgCgggggagaUGCGUCCg -3'
miRNA:   3'- ggUgUGCUUGUGGCa--GCgG--------AUGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 5312 0.66 0.98768
Target:  5'- gCUcCGCGAGCGCguCGUcCGCCgggGCG-CCg -3'
miRNA:   3'- -GGuGUGCUUGUG--GCA-GCGGa--UGCaGG- -5'
21493 5' -53.1 NC_004812.1 + 35445 0.66 0.98768
Target:  5'- aCCACcCGGcccucgcaGCGCUGcagCGCCgcgGCGUCg -3'
miRNA:   3'- -GGUGuGCU--------UGUGGCa--GCGGa--UGCAGg -5'
21493 5' -53.1 NC_004812.1 + 58157 0.66 0.98768
Target:  5'- gCGCAUGGACGgggcgcccCCG-CGCCUGcCGcCCc -3'
miRNA:   3'- gGUGUGCUUGU--------GGCaGCGGAU-GCaGG- -5'
21493 5' -53.1 NC_004812.1 + 8366 0.66 0.98768
Target:  5'- aCCGCgucgGCGGcCGCCGggGCCcgGgGUCCg -3'
miRNA:   3'- -GGUG----UGCUuGUGGCagCGGa-UgCAGG- -5'
21493 5' -53.1 NC_004812.1 + 96685 0.66 0.98768
Target:  5'- aCCGCGCucGAguGgGCCGgcaUCGCCgcgGgGUCCg -3'
miRNA:   3'- -GGUGUG--CU--UgUGGC---AGCGGa--UgCAGG- -5'
21493 5' -53.1 NC_004812.1 + 62580 0.66 0.98768
Target:  5'- -aGCACGGggcacACGCCGggcaCGCCcACGgCCg -3'
miRNA:   3'- ggUGUGCU-----UGUGGCa---GCGGaUGCaGG- -5'
21493 5' -53.1 NC_004812.1 + 104445 0.66 0.98768
Target:  5'- -gGCACGAGCGCCcugcugagCGCCaAgGUCa -3'
miRNA:   3'- ggUGUGCUUGUGGca------GCGGaUgCAGg -5'
21493 5' -53.1 NC_004812.1 + 135331 0.66 0.98768
Target:  5'- gCACACGcu-GCUGaCGCucaaCUGCGUCCg -3'
miRNA:   3'- gGUGUGCuugUGGCaGCG----GAUGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 81099 0.66 0.98768
Target:  5'- gCGgACGuGCACCGggCGCUgggggGCGUgCCg -3'
miRNA:   3'- gGUgUGCuUGUGGCa-GCGGa----UGCA-GG- -5'
21493 5' -53.1 NC_004812.1 + 95060 0.66 0.98768
Target:  5'- cCgGCGCGAGCGgcuaCGcgacCGCCgcCGUCCg -3'
miRNA:   3'- -GgUGUGCUUGUg---GCa---GCGGauGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 2242 0.66 0.98768
Target:  5'- aCGCGCGGcgcgGCGgCGggguccgCGUCgGCGUCCg -3'
miRNA:   3'- gGUGUGCU----UGUgGCa------GCGGaUGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 72669 0.66 0.98768
Target:  5'- uCCGCgGCGAGC-CCGgCGagaACGUCCg -3'
miRNA:   3'- -GGUG-UGCUUGuGGCaGCggaUGCAGG- -5'
21493 5' -53.1 NC_004812.1 + 58864 0.66 0.98768
Target:  5'- aCCACGCGGuucuugACGCCaUCuCCUugGggaagCCg -3'
miRNA:   3'- -GGUGUGCU------UGUGGcAGcGGAugCa----GG- -5'
21493 5' -53.1 NC_004812.1 + 80222 0.66 0.98768
Target:  5'- cCCGC-CGGGcCAUCGcgCGCCUcgGCGcCCu -3'
miRNA:   3'- -GGUGuGCUU-GUGGCa-GCGGA--UGCaGG- -5'
21493 5' -53.1 NC_004812.1 + 99222 0.66 0.98768
Target:  5'- gCCGgGCGAACG-CGUCGgCggggGCGggggCCg -3'
miRNA:   3'- -GGUgUGCUUGUgGCAGCgGa---UGCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.