miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 154751 0.66 0.764798
Target:  5'- cGCGGaggaG-CGGGcCGgGGCUGCGCg -3'
miRNA:   3'- aCGCCgaagCaGUCC-GCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 124238 0.66 0.745736
Target:  5'- gGCGGCgggccuggCGggGGGCGCGcGCggcgGCGCc -3'
miRNA:   3'- aCGCCGaa------GCagUCCGCGU-CGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 103657 0.66 0.745736
Target:  5'- gGCgGGCcccUCGUCgaGGGC-CAGCUGgGCg -3'
miRNA:   3'- aCG-CCGa--AGCAG--UCCGcGUCGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 42911 0.66 0.72628
Target:  5'- aGaCGGCggCGcCGGGCGCAgaGCUcgucgaGCGCg -3'
miRNA:   3'- aC-GCCGaaGCaGUCCGCGU--CGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 1465 0.66 0.745736
Target:  5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3'
miRNA:   3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 59266 0.66 0.759125
Target:  5'- gGCGGUgcgcgggaucagggUCG-CGGGCGC-GCgGCACc -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 54532 0.66 0.764798
Target:  5'- cUGCGGUccgUCuUCGGGgGCGGCgacuccgacgGCGCc -3'
miRNA:   3'- -ACGCCGa--AGcAGUCCgCGUCGa---------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 67531 0.66 0.745736
Target:  5'- cUGUGGUccaCGUacgGGGCGCGGUcgGCGCa -3'
miRNA:   3'- -ACGCCGaa-GCAg--UCCGCGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 106451 0.66 0.72628
Target:  5'- gGCGGC--CGUCuccagcacGCGCuccAGCUGCGCg -3'
miRNA:   3'- aCGCCGaaGCAGuc------CGCG---UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 124208 0.66 0.755321
Target:  5'- cGCGGCggCGaCcgAGGcCGCGGC-GCACc -3'
miRNA:   3'- aCGCCGaaGCaG--UCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 54381 0.66 0.764798
Target:  5'- -cUGGC--CGUCGGGCGCccGCggGCACg -3'
miRNA:   3'- acGCCGaaGCAGUCCGCGu-CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 152649 0.66 0.730199
Target:  5'- cGCGGCgggggggCGcCGGGCcuccgggaggcggggGCAGCgaggGCGCu -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCG---------------CGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 89260 0.66 0.745736
Target:  5'- cGCaGGCgugggacgCG-CAGGcCGCGGCgcgGCGCg -3'
miRNA:   3'- aCG-CCGaa------GCaGUCC-GCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 141441 0.66 0.736053
Target:  5'- gGCGGCgcgccacgUGUCGuacacucgcucGGCGaCGGCUGCGa -3'
miRNA:   3'- aCGCCGaa------GCAGU-----------CCGC-GUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 3474 0.66 0.745736
Target:  5'- gGCGGUcgcgcCGUCA-GCGCGGCgggccgcggGCGCg -3'
miRNA:   3'- aCGCCGaa---GCAGUcCGCGUCGa--------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 91606 0.67 0.686477
Target:  5'- gUGCGGUUgaugaAGGCGCAGUUGUucuuGCg -3'
miRNA:   3'- -ACGCCGAagcagUCCGCGUCGACG----UG- -5'
21499 3' -59.1 NC_004812.1 + 35819 0.67 0.720377
Target:  5'- gUGgGGCUgggCGUCGccgucgcgguacuuGCGCAGCaGCGCg -3'
miRNA:   3'- -ACgCCGAa--GCAGUc-------------CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 123503 0.67 0.676392
Target:  5'- aGCGGgggUCugggGUCGGGCGCcGGgaGCGCg -3'
miRNA:   3'- aCGCCga-AG----CAGUCCGCG-UCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 127973 0.67 0.716427
Target:  5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3'
miRNA:   3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 23147 0.67 0.665259
Target:  5'- cUGCuGGCgcacagCGUCAgcgcccuGGCGCAcaccguguacguGCUGCACu -3'
miRNA:   3'- -ACG-CCGaa----GCAGU-------CCGCGU------------CGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.