miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 103323 0.67 0.696517
Target:  5'- aGCGGCUggaaCAGGCacgaCAGCUGgCGCg -3'
miRNA:   3'- aCGCCGAagcaGUCCGc---GUCGAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 71227 0.67 0.676392
Target:  5'- gGCGGCcgCGa-GGGCGCGGCggGgACg -3'
miRNA:   3'- aCGCCGaaGCagUCCGCGUCGa-CgUG- -5'
21499 3' -59.1 NC_004812.1 + 99846 0.67 0.676392
Target:  5'- gGCgGGCUgcagcUCGUCGGaGCGCuGCcGCAg -3'
miRNA:   3'- aCG-CCGA-----AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 98692 0.67 0.676392
Target:  5'- cGCGGUcgaaccgccgCGcCGGGgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--------GCaGUCCgCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 91568 0.67 0.686477
Target:  5'- gGCGGCgcaugUUGgagaAGGCGguGCUgggucGCGCg -3'
miRNA:   3'- aCGCCGa----AGCag--UCCGCguCGA-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 66115 0.67 0.716427
Target:  5'- gGCGGgggUCG-CAGGCGCcgccGCcGCGCa -3'
miRNA:   3'- aCGCCga-AGCaGUCCGCGu---CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 19892 0.67 0.706503
Target:  5'- cGCGGCggCGg-GGGaCGCGGCggcccGCGCc -3'
miRNA:   3'- aCGCCGaaGCagUCC-GCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 45431 0.67 0.706503
Target:  5'- cGCGGUggccacCGUCAGGUuCAGCUcCGCc -3'
miRNA:   3'- aCGCCGaa----GCAGUCCGcGUCGAcGUG- -5'
21499 3' -59.1 NC_004812.1 + 140002 0.67 0.706503
Target:  5'- gGCGGCcaggUCuGUCAGGUa-GGuCUGCACg -3'
miRNA:   3'- aCGCCGa---AG-CAGUCCGcgUC-GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 150177 0.67 0.706503
Target:  5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 5999 0.67 0.716427
Target:  5'- -cCGGaacgcgCGUCGGcGCGCGGCgGCGCc -3'
miRNA:   3'- acGCCgaa---GCAGUC-CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 149568 0.67 0.720377
Target:  5'- cGCGGUccacagUCG-CGGcGCGCAGCUaucgaggaacccgcaGCGCg -3'
miRNA:   3'- aCGCCGa-----AGCaGUC-CGCGUCGA---------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 148282 0.67 0.706503
Target:  5'- gGCGGCUucucggcgcuccUCGUCGGcguacGCGCGGagcucccgGCGCa -3'
miRNA:   3'- aCGCCGA------------AGCAGUC-----CGCGUCga------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 38741 0.67 0.715438
Target:  5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3'
miRNA:   3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 90654 0.67 0.696517
Target:  5'- gUGUGGCagagcacgUUCGUgCucguGGUGCGGCgcgGCGCg -3'
miRNA:   3'- -ACGCCG--------AAGCA-Gu---CCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 2465 0.67 0.716427
Target:  5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3'
miRNA:   3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 35819 0.67 0.720377
Target:  5'- gUGgGGCUgggCGUCGccgucgcgguacuuGCGCAGCaGCGCg -3'
miRNA:   3'- -ACgCCGAa--GCAGUc-------------CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 127973 0.67 0.716427
Target:  5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3'
miRNA:   3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 7840 0.67 0.715438
Target:  5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3'
miRNA:   3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 75582 0.67 0.716427
Target:  5'- aUGgGGCUUCaGUCGGaccGCGC-GCUGguCg -3'
miRNA:   3'- -ACgCCGAAG-CAGUC---CGCGuCGACguG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.