miRNA display CGI


Results 81 - 100 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 90654 0.67 0.696517
Target:  5'- gUGUGGCagagcacgUUCGUgCucguGGUGCGGCgcgGCGCg -3'
miRNA:   3'- -ACGCCG--------AAGCA-Gu---CCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 123503 0.67 0.676392
Target:  5'- aGCGGgggUCugggGUCGGGCGCcGGgaGCGCg -3'
miRNA:   3'- aCGCCga-AG----CAGUCCGCG-UCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 38741 0.67 0.715438
Target:  5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3'
miRNA:   3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 75582 0.67 0.716427
Target:  5'- aUGgGGCUUCaGUCGGaccGCGC-GCUGguCg -3'
miRNA:   3'- -ACgCCGAAG-CAGUC---CGCGuCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 150177 0.67 0.706503
Target:  5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 57247 0.67 0.67336
Target:  5'- cUGCGGCUcggCGagauccuggccuacUCcGGCGC-GCUGUACg -3'
miRNA:   3'- -ACGCCGAa--GC--------------AGuCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 51443 0.67 0.686477
Target:  5'- cGCGGCcgcUCG-CAGGCGgGGC-GCuACg -3'
miRNA:   3'- aCGCCGa--AGCaGUCCGCgUCGaCG-UG- -5'
21499 3' -59.1 NC_004812.1 + 71968 0.67 0.666272
Target:  5'- cGUGGUggcCGUCuGGCGCGGCgucGC-Ca -3'
miRNA:   3'- aCGCCGaa-GCAGuCCGCGUCGa--CGuG- -5'
21499 3' -59.1 NC_004812.1 + 135203 0.67 0.684463
Target:  5'- cGCuGCgacgCGUCGGcGCGCGGCgagacggccgcgGCGCg -3'
miRNA:   3'- aCGcCGaa--GCAGUC-CGCGUCGa-----------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 91606 0.67 0.686477
Target:  5'- gUGCGGUUgaugaAGGCGCAGUUGUucuuGCg -3'
miRNA:   3'- -ACGCCGAagcagUCCGCGUCGACG----UG- -5'
21499 3' -59.1 NC_004812.1 + 23147 0.67 0.665259
Target:  5'- cUGCuGGCgcacagCGUCAgcgcccuGGCGCAcaccguguacguGCUGCACu -3'
miRNA:   3'- -ACG-CCGaa----GCAGU-------CCGCGU------------CGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 149568 0.67 0.720377
Target:  5'- cGCGGUccacagUCG-CGGcGCGCAGCUaucgaggaacccgcaGCGCg -3'
miRNA:   3'- aCGCCGa-----AGCaGUC-CGCGUCGA---------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 2465 0.67 0.716427
Target:  5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3'
miRNA:   3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 140002 0.67 0.706503
Target:  5'- gGCGGCcaggUCuGUCAGGUa-GGuCUGCACg -3'
miRNA:   3'- aCGCCGa---AG-CAGUCCGcgUC-GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 56436 0.67 0.706503
Target:  5'- gGCGGCgggCGgCGGGCcUGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa-GCaGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 149695 0.67 0.696517
Target:  5'- -cCGGCc-CG-CGGGCGCAGC-GCGCc -3'
miRNA:   3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 27375 0.67 0.696517
Target:  5'- cGCGGCccgCGcCAGGUGCGcuccGCcgGCGCc -3'
miRNA:   3'- aCGCCGaa-GCaGUCCGCGU----CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3244 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 60899 0.67 0.686477
Target:  5'- aGuCGGCg--GUgGGGCGCGGCaggcgGCACc -3'
miRNA:   3'- aC-GCCGaagCAgUCCGCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 5999 0.67 0.716427
Target:  5'- -cCGGaacgcgCGUCGGcGCGCGGCgGCGCc -3'
miRNA:   3'- acGCCgaa---GCAGUC-CGCGUCGaCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.