miRNA display CGI


Results 101 - 120 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 142260 0.68 0.615426
Target:  5'- cGCGGCaaccaCGUgCAGGCGCAGgUggggcaGCACc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCgA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 105869 0.68 0.645958
Target:  5'- gGaCGGCgggUCGUgGGcGCGCGG-UGCGCu -3'
miRNA:   3'- aC-GCCGa--AGCAgUC-CGCGUCgACGUG- -5'
21499 3' -59.1 NC_004812.1 + 131489 0.68 0.635781
Target:  5'- aGCGGCgucgCGUCGGacGUGCuGCUGUucgGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUC--CGCGuCGACG---UG- -5'
21499 3' -59.1 NC_004812.1 + 37807 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 137984 0.68 0.656125
Target:  5'- gGCGGCcgCGUCuGGgGCGuGCUGaACg -3'
miRNA:   3'- aCGCCGaaGCAGuCCgCGU-CGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 153855 0.68 0.635781
Target:  5'- gGCGGCgUUGcagagCGGGCaGCuGUUGCGCa -3'
miRNA:   3'- aCGCCGaAGCa----GUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 55684 0.68 0.656125
Target:  5'- aGUGGCUgUCGguggcggUGGGCGCGcGCcUGCACc -3'
miRNA:   3'- aCGCCGA-AGCa------GUCCGCGU-CG-ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 20409 0.68 0.656125
Target:  5'- gGCGGUgggugCGgCAGGCGCuGCggucgauguggUGCGCg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCGuCG-----------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 92982 0.68 0.655109
Target:  5'- gGCGaGUUUCGUCgugcugcugccgcAGGaccgggccgacgUGCAGCUGCGCc -3'
miRNA:   3'- aCGC-CGAAGCAG-------------UCC------------GCGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 21188 0.68 0.615426
Target:  5'- cGCGGagggCGUcCAGGUGCGcGCcGCGCa -3'
miRNA:   3'- aCGCCgaa-GCA-GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 6906 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 16888 0.68 0.613392
Target:  5'- cGUGGCcgaGgccaucagccacCAGGCGCuGCUGCGCa -3'
miRNA:   3'- aCGCCGaagCa-----------GUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 131494 0.68 0.612375
Target:  5'- aUGCGGcccacgccccggaaCgcgCGUCGGcGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCC--------------Gaa-GCAGUC-CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 17970 0.68 0.625601
Target:  5'- gGCGGC--CGUCAGGCGCccgacguggAGcCUGuCGCc -3'
miRNA:   3'- aCGCCGaaGCAGUCCGCG---------UC-GAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 107564 0.68 0.615426
Target:  5'- cGCGGCUcaggaAGGCgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGAagcagUCCG-CGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 87045 0.68 0.615426
Target:  5'- gGCGGCUg---C-GGCGCGGCcgGCGCc -3'
miRNA:   3'- aCGCCGAagcaGuCCGCGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 57962 0.68 0.605263
Target:  5'- cGCGuGCgcgCGUCgcgcccGGGCGCAGCgcgGcCGCg -3'
miRNA:   3'- aCGC-CGaa-GCAG------UCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 76989 0.68 0.645958
Target:  5'- gGCGGCUUUGgccgCcucGGCGCGcGC-GCGCg -3'
miRNA:   3'- aCGCCGAAGCa---Gu--CCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 81640 0.68 0.625601
Target:  5'- cGCGGCg-CGUCuucgAGGCGCAcccgcugaccGCgGCGCg -3'
miRNA:   3'- aCGCCGaaGCAG----UCCGCGU----------CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 107633 0.68 0.660187
Target:  5'- cUGCGGCcgCGUCgcggggcacgucgccGGGgGCGGCcggcaGCACg -3'
miRNA:   3'- -ACGCCGaaGCAG---------------UCCgCGUCGa----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.