miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 98881 0.7 0.515483
Target:  5'- cGaCGGCgucaUCGUCggaaagagGGGCGCGGUgGCGCg -3'
miRNA:   3'- aC-GCCGa---AGCAG--------UCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 155108 0.7 0.505805
Target:  5'- cGCGGCggCG-CGGGC-CGGCcgGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCCGcGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 20297 0.7 0.505805
Target:  5'- gGCGGCg-CG-CcGGCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGaaGCaGuCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 122364 0.7 0.505805
Target:  5'- aUGaCGGCgaccaugaggUCGUCcgAGGCGCcGUUGCGCu -3'
miRNA:   3'- -AC-GCCGa---------AGCAG--UCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 146062 0.7 0.509667
Target:  5'- cGCGGCgcuacguggaccagUCGaCGGGCGCgAGCgaGCGCu -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCG-UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3017 0.7 0.515483
Target:  5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3'
miRNA:   3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 124186 0.7 0.515483
Target:  5'- gGCGGCU-----GGGCGCGGCcGCGCc -3'
miRNA:   3'- aCGCCGAagcagUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 152617 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 38536 0.7 0.535056
Target:  5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3'
miRNA:   3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 90613 0.69 0.585004
Target:  5'- gGCGGCgaUGUCGGGCGUcGUgaUGUGCu -3'
miRNA:   3'- aCGCCGaaGCAGUCCGCGuCG--ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 117391 0.69 0.585004
Target:  5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 66307 0.69 0.59512
Target:  5'- cGCGGCUggCGgcgccCAGGCGCccgucgcccgcGCUGCAg -3'
miRNA:   3'- aCGCCGAa-GCa----GUCCGCGu----------CGACGUg -5'
21499 3' -59.1 NC_004812.1 + 67794 0.69 0.59512
Target:  5'- gGCGGCUUCGggGGGgGCGGgCccgGCAg -3'
miRNA:   3'- aCGCCGAAGCagUCCgCGUC-Ga--CGUg -5'
21499 3' -59.1 NC_004812.1 + 127761 0.69 0.594107
Target:  5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 103630 0.69 0.59512
Target:  5'- cGCGGCgguagcucuccUCG-CGGGCGCGGagcucgGCGCg -3'
miRNA:   3'- aCGCCGa----------AGCaGUCCGCGUCga----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 109483 0.69 0.59512
Target:  5'- cUGCGGCaUCGUgcGGCGgCuGCUGCGu -3'
miRNA:   3'- -ACGCCGaAGCAguCCGC-GuCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 108759 0.69 0.574921
Target:  5'- cUGCGGCUggG--GGGCGCGGggGCGCc -3'
miRNA:   3'- -ACGCCGAagCagUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 110507 0.69 0.544941
Target:  5'- aGgGGCUggCGUgCGGGCGCcuGCUGC-Cg -3'
miRNA:   3'- aCgCCGAa-GCA-GUCCGCGu-CGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 129095 0.69 0.585004
Target:  5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3'
miRNA:   3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.