miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 147839 0.69 0.564879
Target:  5'- cGCGGggUUGUCgAGGCucucGCGGCUGCc- -3'
miRNA:   3'- aCGCCgaAGCAG-UCCG----CGUCGACGug -5'
21499 3' -59.1 NC_004812.1 + 154833 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 56236 0.69 0.564879
Target:  5'- cGCGGCgcgccgacUCGUCcgcggGGGCGCGcccCUGCGCc -3'
miRNA:   3'- aCGCCGa-------AGCAG-----UCCGCGUc--GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 35922 0.69 0.585004
Target:  5'- gGCGGCaguggggCGgCAGGCGgGGCaGCGCc -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 44190 0.69 0.585004
Target:  5'- cUGCGGCggggGUgGGGCucgGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGaag-CAgUCCG---CGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 68986 0.69 0.574921
Target:  5'- cUGCGGgUUCacCAGGUaGCAGCUGCuCa -3'
miRNA:   3'- -ACGCCgAAGcaGUCCG-CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 109483 0.69 0.59512
Target:  5'- cUGCGGCaUCGUgcGGCGgCuGCUGCGu -3'
miRNA:   3'- -ACGCCGaAGCAguCCGC-GuCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 103630 0.69 0.59512
Target:  5'- cGCGGCgguagcucuccUCG-CGGGCGCGGagcucgGCGCg -3'
miRNA:   3'- aCGCCGa----------AGCaGUCCGCGUCga----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 66307 0.69 0.59512
Target:  5'- cGCGGCUggCGgcgccCAGGCGCccgucgcccgcGCUGCAg -3'
miRNA:   3'- aCGCCGAa-GCa----GUCCGCGu----------CGACGUg -5'
21499 3' -59.1 NC_004812.1 + 127761 0.69 0.594107
Target:  5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 26617 0.69 0.544941
Target:  5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3'
miRNA:   3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 29325 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 108759 0.69 0.574921
Target:  5'- cUGCGGCUggG--GGGCGCGGggGCGCc -3'
miRNA:   3'- -ACGCCGAagCagUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 71914 0.69 0.574921
Target:  5'- cGCGGCgcCG-CGGGCGCuGCaGCGg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 147706 0.69 0.574921
Target:  5'- cGgGGg-UCGUguGGCGCggggGGCUGUACg -3'
miRNA:   3'- aCgCCgaAGCAguCCGCG----UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 90613 0.69 0.585004
Target:  5'- gGCGGCgaUGUCGGGCGUcGUgaUGUGCu -3'
miRNA:   3'- aCGCCGaaGCAGUCCGCGuCG--ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 117391 0.69 0.585004
Target:  5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 67794 0.69 0.59512
Target:  5'- gGCGGCUUCGggGGGgGCGGgCccgGCAg -3'
miRNA:   3'- aCGCCGAAGCagUCCgCGUC-Ga--CGUg -5'
21499 3' -59.1 NC_004812.1 + 153436 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3587 0.69 0.585004
Target:  5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3'
miRNA:   3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.