miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 128526 0.7 0.515483
Target:  5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3'
miRNA:   3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 122441 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 124186 0.7 0.515483
Target:  5'- gGCGGCU-----GGGCGCGGCcGCGCc -3'
miRNA:   3'- aCGCCGAagcagUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 56898 0.7 0.525235
Target:  5'- gUGCGGCcagcccugggCG-CAGGCGCcGCcGCACg -3'
miRNA:   3'- -ACGCCGaa--------GCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 38536 0.7 0.535056
Target:  5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3'
miRNA:   3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 152617 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 121716 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 7635 0.7 0.535056
Target:  5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3'
miRNA:   3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 98626 0.7 0.535056
Target:  5'- cGCGGC--CGUCGcGGcCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaaGCAGU-CC-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 26617 0.69 0.544941
Target:  5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3'
miRNA:   3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 110507 0.69 0.544941
Target:  5'- aGgGGCUggCGUgCGGGCGCcuGCUGC-Cg -3'
miRNA:   3'- aCgCCGAa-GCA-GUCCGCGu-CGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 152125 0.69 0.544941
Target:  5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3'
miRNA:   3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 19013 0.69 0.554884
Target:  5'- cGCGGCcgCGggCcGGCGCAGCgcggGCGg -3'
miRNA:   3'- aCGCCGaaGCa-GuCCGCGUCGa---CGUg -5'
21499 3' -59.1 NC_004812.1 + 41165 0.69 0.554884
Target:  5'- aGCGGCgcgcCGcCAGGCGCucucGGCgccGCGCc -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCG----UCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 122535 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 154833 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 56236 0.69 0.564879
Target:  5'- cGCGGCgcgccgacUCGUCcgcggGGGCGCGcccCUGCGCc -3'
miRNA:   3'- aCGCCGa-------AGCAG-----UCCGCGUc--GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 54765 0.69 0.564879
Target:  5'- cGCGGCgcgCGggcggcuaCGGGgGCGGCUGguCg -3'
miRNA:   3'- aCGCCGaa-GCa-------GUCCgCGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 147839 0.69 0.564879
Target:  5'- cGCGGggUUGUCgAGGCucucGCGGCUGCc- -3'
miRNA:   3'- aCGCCgaAGCAG-UCCG----CGUCGACGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.