Results 81 - 100 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 99405 | 0.69 | 0.564879 |
Target: 5'- gGCGGCUggggUCGUCgGGGCGCAuGaagaacaUGUACu -3' miRNA: 3'- aCGCCGA----AGCAG-UCCGCGU-Cg------ACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 75482 | 0.69 | 0.564879 |
Target: 5'- cGCGGCcgCGgcCAGGUcCAGCgGCACg -3' miRNA: 3'- aCGCCGaaGCa-GUCCGcGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 54765 | 0.69 | 0.564879 |
Target: 5'- cGCGGCgcgCGggcggcuaCGGGgGCGGCUGguCg -3' miRNA: 3'- aCGCCGaa-GCa-------GUCCgCGUCGACguG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 29325 | 0.69 | 0.564879 |
Target: 5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3' miRNA: 3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 68986 | 0.69 | 0.574921 |
Target: 5'- cUGCGGgUUCacCAGGUaGCAGCUGCuCa -3' miRNA: 3'- -ACGCCgAAGcaGUCCG-CGUCGACGuG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 147706 | 0.69 | 0.574921 |
Target: 5'- cGgGGg-UCGUguGGCGCggggGGCUGUACg -3' miRNA: 3'- aCgCCgaAGCAguCCGCG----UCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 108759 | 0.69 | 0.574921 |
Target: 5'- cUGCGGCUggG--GGGCGCGGggGCGCc -3' miRNA: 3'- -ACGCCGAagCagUCCGCGUCgaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 71914 | 0.69 | 0.574921 |
Target: 5'- cGCGGCgcCG-CGGGCGCuGCaGCGg -3' miRNA: 3'- aCGCCGaaGCaGUCCGCGuCGaCGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 100295 | 0.69 | 0.574921 |
Target: 5'- gGCGGCgcgCG-CGcGCGC-GCUGCGCg -3' miRNA: 3'- aCGCCGaa-GCaGUcCGCGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 3587 | 0.69 | 0.585004 |
Target: 5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3' miRNA: 3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 44190 | 0.69 | 0.585004 |
Target: 5'- cUGCGGCggggGUgGGGCucgGCGGCgGCGCg -3' miRNA: 3'- -ACGCCGaag-CAgUCCG---CGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 55374 | 0.69 | 0.585004 |
Target: 5'- cUGCGGCc-CGUCgAGGC-CGGCgcgGCGCc -3' miRNA: 3'- -ACGCCGaaGCAG-UCCGcGUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 148292 | 0.69 | 0.585004 |
Target: 5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3' miRNA: 3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 110275 | 0.69 | 0.585004 |
Target: 5'- gGCGGC-UCGUggCGGGCggacuggcgGCGGCUGuCGCc -3' miRNA: 3'- aCGCCGaAGCA--GUCCG---------CGUCGAC-GUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 117391 | 0.69 | 0.585004 |
Target: 5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3' miRNA: 3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 90613 | 0.69 | 0.585004 |
Target: 5'- gGCGGCgaUGUCGGGCGUcGUgaUGUGCu -3' miRNA: 3'- aCGCCGaaGCAGUCCGCGuCG--ACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 35922 | 0.69 | 0.585004 |
Target: 5'- gGCGGCaguggggCGgCAGGCGgGGCaGCGCc -3' miRNA: 3'- aCGCCGaa-----GCaGUCCGCgUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 129095 | 0.69 | 0.585004 |
Target: 5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3' miRNA: 3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127761 | 0.69 | 0.594107 |
Target: 5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3' miRNA: 3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 2253 | 0.69 | 0.594107 |
Target: 5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3' miRNA: 3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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