miRNA display CGI


Results 101 - 120 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 66307 0.69 0.59512
Target:  5'- cGCGGCUggCGgcgccCAGGCGCccgucgcccgcGCUGCAg -3'
miRNA:   3'- aCGCCGAa-GCa----GUCCGCGu----------CGACGUg -5'
21499 3' -59.1 NC_004812.1 + 67794 0.69 0.59512
Target:  5'- gGCGGCUUCGggGGGgGCGGgCccgGCAg -3'
miRNA:   3'- aCGCCGAAGCagUCCgCGUC-Ga--CGUg -5'
21499 3' -59.1 NC_004812.1 + 103630 0.69 0.59512
Target:  5'- cGCGGCgguagcucuccUCG-CGGGCGCGGagcucgGCGCg -3'
miRNA:   3'- aCGCCGa----------AGCaGUCCGCGUCga----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 109483 0.69 0.59512
Target:  5'- cUGCGGCaUCGUgcGGCGgCuGCUGCGu -3'
miRNA:   3'- -ACGCCGaAGCAguCCGC-GuCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 128169 0.69 0.59512
Target:  5'- cGCGGCgcugCGUC-GGCGCcuGGCggagacGCACc -3'
miRNA:   3'- aCGCCGaa--GCAGuCCGCG--UCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 57962 0.68 0.605263
Target:  5'- cGCGuGCgcgCGUCgcgcccGGGCGCAGCgcgGcCGCg -3'
miRNA:   3'- aCGC-CGaa-GCAG------UCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 131494 0.68 0.612375
Target:  5'- aUGCGGcccacgccccggaaCgcgCGUCGGcGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCC--------------Gaa-GCAGUC-CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 16888 0.68 0.613392
Target:  5'- cGUGGCcgaGgccaucagccacCAGGCGCuGCUGCGCa -3'
miRNA:   3'- aCGCCGaagCa-----------GUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 6906 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 72846 0.68 0.615426
Target:  5'- aGCGGCcgccggCGaUCAGcGCggacagcgcggGCAGCUGCGCc -3'
miRNA:   3'- aCGCCGaa----GC-AGUC-CG-----------CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 37807 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 87045 0.68 0.615426
Target:  5'- gGCGGCUg---C-GGCGCGGCcgGCGCc -3'
miRNA:   3'- aCGCCGAagcaGuCCGCGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 107564 0.68 0.615426
Target:  5'- cGCGGCUcaggaAGGCgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGAagcagUCCG-CGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 2187 0.68 0.615426
Target:  5'- gGCGGCgucgUCGUCGucGGCgaGCAGCgUGuCGCc -3'
miRNA:   3'- aCGCCGa---AGCAGU--CCG--CGUCG-AC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 127696 0.68 0.615426
Target:  5'- gGCGGCgucgUCGUCGucGGCgaGCAGCgUGuCGCc -3'
miRNA:   3'- aCGCCGa---AGCAGU--CCG--CGUCG-AC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 118793 0.68 0.615426
Target:  5'- -cCGGCccCG-CGGGCGCAGC-GCGCc -3'
miRNA:   3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 142260 0.68 0.615426
Target:  5'- cGCGGCaaccaCGUgCAGGCGCAGgUggggcaGCACc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCgA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 21188 0.68 0.615426
Target:  5'- cGCGGagggCGUcCAGGUGCGcGCcGCGCa -3'
miRNA:   3'- aCGCCgaa-GCA-GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 49586 0.68 0.625601
Target:  5'- cUGgGGCUg---CuGGCGCAGCagGCGCg -3'
miRNA:   3'- -ACgCCGAagcaGuCCGCGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 5020 0.68 0.625601
Target:  5'- gGCGGCagguggggCGgCAGGCGgGGCaGCGCc -3'
miRNA:   3'- aCGCCGaa------GCaGUCCGCgUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.