Results 61 - 80 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 127973 | 0.67 | 0.716427 |
Target: 5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3' miRNA: 3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 5999 | 0.67 | 0.716427 |
Target: 5'- -cCGGaacgcgCGUCGGcGCGCGGCgGCGCc -3' miRNA: 3'- acGCCgaa---GCAGUC-CGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 75582 | 0.67 | 0.716427 |
Target: 5'- aUGgGGCUUCaGUCGGaccGCGC-GCUGguCg -3' miRNA: 3'- -ACgCCGAAG-CAGUC---CGCGuCGACguG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 38741 | 0.67 | 0.715438 |
Target: 5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3' miRNA: 3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 7840 | 0.67 | 0.715438 |
Target: 5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3' miRNA: 3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 19892 | 0.67 | 0.706503 |
Target: 5'- cGCGGCggCGg-GGGaCGCGGCggcccGCGCc -3' miRNA: 3'- aCGCCGaaGCagUCC-GCGUCGa----CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 45431 | 0.67 | 0.706503 |
Target: 5'- cGCGGUggccacCGUCAGGUuCAGCUcCGCc -3' miRNA: 3'- aCGCCGaa----GCAGUCCGcGUCGAcGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 119276 | 0.67 | 0.706503 |
Target: 5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3' miRNA: 3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 150177 | 0.67 | 0.706503 |
Target: 5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3' miRNA: 3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 140002 | 0.67 | 0.706503 |
Target: 5'- gGCGGCcaggUCuGUCAGGUa-GGuCUGCACg -3' miRNA: 3'- aCGCCGa---AG-CAGUCCGcgUC-GACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 56436 | 0.67 | 0.706503 |
Target: 5'- gGCGGCgggCGgCGGGCcUGGCgGCGCg -3' miRNA: 3'- aCGCCGaa-GCaGUCCGcGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 148282 | 0.67 | 0.706503 |
Target: 5'- gGCGGCUucucggcgcuccUCGUCGGcguacGCGCGGagcucccgGCGCa -3' miRNA: 3'- aCGCCGA------------AGCAGUC-----CGCGUCga------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 103323 | 0.67 | 0.696517 |
Target: 5'- aGCGGCUggaaCAGGCacgaCAGCUGgCGCg -3' miRNA: 3'- aCGCCGAagcaGUCCGc---GUCGAC-GUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 72236 | 0.67 | 0.696517 |
Target: 5'- cUGCGGCggggCGUCcGGU-CGGCggGCGCg -3' miRNA: 3'- -ACGCCGaa--GCAGuCCGcGUCGa-CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 48136 | 0.67 | 0.696517 |
Target: 5'- aGCGGgUggcCGUCcucgAGGCGCGGCgccggGCGg -3' miRNA: 3'- aCGCCgAa--GCAG----UCCGCGUCGa----CGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 152883 | 0.67 | 0.696517 |
Target: 5'- cGCGGCccgCGcCAGGUGCGcuccGCcgGCGCc -3' miRNA: 3'- aCGCCGaa-GCaGUCCGCGU----CGa-CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 19551 | 0.67 | 0.696517 |
Target: 5'- aUGCGGac-CGUCAGcGaCGCGGCcgacGCGCa -3' miRNA: 3'- -ACGCCgaaGCAGUC-C-GCGUCGa---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 149695 | 0.67 | 0.696517 |
Target: 5'- -cCGGCc-CG-CGGGCGCAGC-GCGCc -3' miRNA: 3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 90654 | 0.67 | 0.696517 |
Target: 5'- gUGUGGCagagcacgUUCGUgCucguGGUGCGGCgcgGCGCg -3' miRNA: 3'- -ACGCCG--------AAGCA-Gu---CCGCGUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 27375 | 0.67 | 0.696517 |
Target: 5'- cGCGGCccgCGcCAGGUGCGcuccGCcgGCGCc -3' miRNA: 3'- aCGCCGaa-GCaGUCCGCGU----CGa-CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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