miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 91568 0.67 0.686477
Target:  5'- gGCGGCgcaugUUGgagaAGGCGguGCUgggucGCGCg -3'
miRNA:   3'- aCGCCGa----AGCag--UCCGCguCGA-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 30377 0.67 0.686477
Target:  5'- gGCGGCcgggUCGgggCucuccuccggGGGCGCGGCggccuucagGCACg -3'
miRNA:   3'- aCGCCGa---AGCa--G----------UCCGCGUCGa--------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 128752 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 91606 0.67 0.686477
Target:  5'- gUGCGGUUgaugaAGGCGCAGUUGUucuuGCg -3'
miRNA:   3'- -ACGCCGAagcagUCCGCGUCGACG----UG- -5'
21499 3' -59.1 NC_004812.1 + 60899 0.67 0.686477
Target:  5'- aGuCGGCg--GUgGGGCGCGGCaggcgGCACc -3'
miRNA:   3'- aC-GCCGaagCAgUCCGCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 51443 0.67 0.686477
Target:  5'- cGCGGCcgcUCG-CAGGCGgGGC-GCuACg -3'
miRNA:   3'- aCGCCGa--AGCaGUCCGCgUCGaCG-UG- -5'
21499 3' -59.1 NC_004812.1 + 3244 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 135203 0.67 0.684463
Target:  5'- cGCuGCgacgCGUCGGcGCGCGGCgagacggccgcgGCGCg -3'
miRNA:   3'- aCGcCGaa--GCAGUC-CGCGUCGa-----------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 123503 0.67 0.676392
Target:  5'- aGCGGgggUCugggGUCGGGCGCcGGgaGCGCg -3'
miRNA:   3'- aCGCCga-AG----CAGUCCGCG-UCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 71227 0.67 0.676392
Target:  5'- gGCGGCcgCGa-GGGCGCGGCggGgACg -3'
miRNA:   3'- aCGCCGaaGCagUCCGCGUCGa-CgUG- -5'
21499 3' -59.1 NC_004812.1 + 99846 0.67 0.676392
Target:  5'- gGCgGGCUgcagcUCGUCGGaGCGCuGCcGCAg -3'
miRNA:   3'- aCG-CCGA-----AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 98692 0.67 0.676392
Target:  5'- cGCGGUcgaaccgccgCGcCGGGgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--------GCaGUCCgCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 90819 0.67 0.675382
Target:  5'- gGCGGCgUCGUgGagcacguGGCGCcGGCgccgGCGCa -3'
miRNA:   3'- aCGCCGaAGCAgU-------CCGCG-UCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 57247 0.67 0.67336
Target:  5'- cUGCGGCUcggCGagauccuggccuacUCcGGCGC-GCUGUACg -3'
miRNA:   3'- -ACGCCGAa--GC--------------AGuCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 91807 0.67 0.666272
Target:  5'- --aGGCccucggCGUCAGGcCGCGGCacaGCACg -3'
miRNA:   3'- acgCCGaa----GCAGUCC-GCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 19859 0.67 0.666272
Target:  5'- gGCGGUccucUUCGUCccGGGCGUcGUggGCGCg -3'
miRNA:   3'- aCGCCG----AAGCAG--UCCGCGuCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 71968 0.67 0.666272
Target:  5'- cGUGGUggcCGUCuGGCGCGGCgucGC-Ca -3'
miRNA:   3'- aCGCCGaa-GCAGuCCGCGUCGa--CGuG- -5'
21499 3' -59.1 NC_004812.1 + 83196 0.67 0.666272
Target:  5'- cGCGGCg--Gg-AGGCGCGGCggccGCGCu -3'
miRNA:   3'- aCGCCGaagCagUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 26703 0.67 0.666272
Target:  5'- gGCGGCgaCGgauccacgCAGGCGC-GUcGCACg -3'
miRNA:   3'- aCGCCGaaGCa-------GUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 23147 0.67 0.665259
Target:  5'- cUGCuGGCgcacagCGUCAgcgcccuGGCGCAcaccguguacguGCUGCACu -3'
miRNA:   3'- -ACG-CCGaa----GCAGU-------CCGCGU------------CGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.