miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 35408 0.66 0.745736
Target:  5'- gGCGGCaugcugUUCGaccaGGGCGCGcuGCUGgGCg -3'
miRNA:   3'- aCGCCG------AAGCag--UCCGCGU--CGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 35819 0.67 0.720377
Target:  5'- gUGgGGCUgggCGUCGccgucgcgguacuuGCGCAGCaGCGCg -3'
miRNA:   3'- -ACgCCGAa--GCAGUc-------------CGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 35922 0.69 0.585004
Target:  5'- gGCGGCaguggggCGgCAGGCGgGGCaGCGCc -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 37807 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 38536 0.7 0.535056
Target:  5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3'
miRNA:   3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 38741 0.67 0.715438
Target:  5'- gGCGGCUcucUCGgggCGGGggucgguCGUAGCgGCGCc -3'
miRNA:   3'- aCGCCGA---AGCa--GUCC-------GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 38827 0.71 0.467924
Target:  5'- cUGCGGCgcgCG-CcGGCGCGGCcgggggGCGCg -3'
miRNA:   3'- -ACGCCGaa-GCaGuCCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 41165 0.69 0.554884
Target:  5'- aGCGGCgcgcCGcCAGGCGCucucGGCgccGCGCc -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCG----UCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 42687 0.66 0.736053
Target:  5'- aUGUGGCUggccgucagcUCG-CAGGCGCGaCUcgaGCACu -3'
miRNA:   3'- -ACGCCGA----------AGCaGUCCGCGUcGA---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 42911 0.66 0.72628
Target:  5'- aGaCGGCggCGcCGGGCGCAgaGCUcgucgaGCGCg -3'
miRNA:   3'- aC-GCCGaaGCaGUCCGCGU--CGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 43720 0.65 0.772296
Target:  5'- gGCGGCUUCGggaacgaacGCGCGGaugaGCGCg -3'
miRNA:   3'- aCGCCGAAGCaguc-----CGCGUCga--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 43849 0.79 0.157891
Target:  5'- cGCGGCgccgaCGUcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 44190 0.69 0.585004
Target:  5'- cUGCGGCggggGUgGGGCucgGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGaag-CAgUCCG---CGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 44350 0.66 0.73313
Target:  5'- aGCGGCgcgCGggCaaagggcgugcccgGGGCGCAGCccgcgGCGCc -3'
miRNA:   3'- aCGCCGaa-GCa-G--------------UCCGCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 45431 0.67 0.706503
Target:  5'- cGCGGUggccacCGUCAGGUuCAGCUcCGCc -3'
miRNA:   3'- aCGCCGaa----GCAGUCCGcGUCGAcGUG- -5'
21499 3' -59.1 NC_004812.1 + 46306 0.66 0.745736
Target:  5'- cGCGGCgggccgCG-CGGGCGaCAGCcGC-Cg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGC-GUCGaCGuG- -5'
21499 3' -59.1 NC_004812.1 + 48136 0.67 0.696517
Target:  5'- aGCGGgUggcCGUCcucgAGGCGCGGCgccggGCGg -3'
miRNA:   3'- aCGCCgAa--GCAG----UCCGCGUCGa----CGUg -5'
21499 3' -59.1 NC_004812.1 + 48501 0.7 0.496206
Target:  5'- aGCGGC-UCGgcuccCAcGGCGCAGUUGguCa -3'
miRNA:   3'- aCGCCGaAGCa----GU-CCGCGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 49586 0.68 0.625601
Target:  5'- cUGgGGCUg---CuGGCGCAGCagGCGCg -3'
miRNA:   3'- -ACgCCGAagcaGuCCGCGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 51443 0.67 0.686477
Target:  5'- cGCGGCcgcUCG-CAGGCGgGGC-GCuACg -3'
miRNA:   3'- aCGCCGa--AGCaGUCCGCgUCGaCG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.