miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 53004 0.71 0.440494
Target:  5'- gGCGGCUguagcaCGUCccgGGGCGC-GCggGCACg -3'
miRNA:   3'- aCGCCGAa-----GCAG---UCCGCGuCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 54381 0.66 0.764798
Target:  5'- -cUGGC--CGUCGGGCGCccGCggGCACg -3'
miRNA:   3'- acGCCGaaGCAGUCCGCGu-CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 54532 0.66 0.764798
Target:  5'- cUGCGGUccgUCuUCGGGgGCGGCgacuccgacgGCGCc -3'
miRNA:   3'- -ACGCCGa--AGcAGUCCgCGUCGa---------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 54765 0.69 0.564879
Target:  5'- cGCGGCgcgCGggcggcuaCGGGgGCGGCUGguCg -3'
miRNA:   3'- aCGCCGaa-GCa-------GUCCgCGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 55374 0.69 0.585004
Target:  5'- cUGCGGCc-CGUCgAGGC-CGGCgcgGCGCc -3'
miRNA:   3'- -ACGCCGaaGCAG-UCCGcGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 55455 0.76 0.229153
Target:  5'- cGCGGC--CGUCAGGuCGCAGaaGCGCa -3'
miRNA:   3'- aCGCCGaaGCAGUCC-GCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 55684 0.68 0.656125
Target:  5'- aGUGGCUgUCGguggcggUGGGCGCGcGCcUGCACc -3'
miRNA:   3'- aCGCCGA-AGCa------GUCCGCGU-CG-ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 55873 0.73 0.372101
Target:  5'- aGgGGCgUCGUCAGGUGUGGUcguaGCACg -3'
miRNA:   3'- aCgCCGaAGCAGUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 56236 0.69 0.564879
Target:  5'- cGCGGCgcgccgacUCGUCcgcggGGGCGCGcccCUGCGCc -3'
miRNA:   3'- aCGCCGa-------AGCAG-----UCCGCGUc--GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 56436 0.67 0.706503
Target:  5'- gGCGGCgggCGgCGGGCcUGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa-GCaGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 56898 0.7 0.525235
Target:  5'- gUGCGGCcagcccugggCG-CAGGCGCcGCcGCACg -3'
miRNA:   3'- -ACGCCGaa--------GCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 57247 0.67 0.67336
Target:  5'- cUGCGGCUcggCGagauccuggccuacUCcGGCGC-GCUGUACg -3'
miRNA:   3'- -ACGCCGAa--GC--------------AGuCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 57962 0.68 0.605263
Target:  5'- cGCGuGCgcgCGUCgcgcccGGGCGCAGCgcgGcCGCg -3'
miRNA:   3'- aCGC-CGaa-GCAG------UCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 59266 0.66 0.759125
Target:  5'- gGCGGUgcgcgggaucagggUCG-CGGGCGC-GCgGCACc -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 60899 0.67 0.686477
Target:  5'- aGuCGGCg--GUgGGGCGCGGCaggcgGCACc -3'
miRNA:   3'- aC-GCCGaagCAgUCCGCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 63586 1.09 0.001116
Target:  5'- cUGCGGCUUCGUCAGGCGCAGCUGCACg -3'
miRNA:   3'- -ACGCCGAAGCAGUCCGCGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 66115 0.67 0.716427
Target:  5'- gGCGGgggUCG-CAGGCGCcgccGCcGCGCa -3'
miRNA:   3'- aCGCCga-AGCaGUCCGCGu---CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 66307 0.69 0.59512
Target:  5'- cGCGGCUggCGgcgccCAGGCGCccgucgcccgcGCUGCAg -3'
miRNA:   3'- aCGCCGAa-GCa----GUCCGCGu----------CGACGUg -5'
21499 3' -59.1 NC_004812.1 + 66556 0.66 0.736053
Target:  5'- cGCugGGCUccagUCGgcggaGGGacgaGCGGCUGCGCg -3'
miRNA:   3'- aCG--CCGA----AGCag---UCCg---CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 67531 0.66 0.745736
Target:  5'- cUGUGGUccaCGUacgGGGCGCGGUcgGCGCa -3'
miRNA:   3'- -ACGCCGaa-GCAg--UCCGCGUCGa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.