miRNA display CGI


Results 101 - 120 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 67794 0.69 0.59512
Target:  5'- gGCGGCUUCGggGGGgGCGGgCccgGCAg -3'
miRNA:   3'- aCGCCGAAGCagUCCgCGUC-Ga--CGUg -5'
21499 3' -59.1 NC_004812.1 + 68986 0.69 0.574921
Target:  5'- cUGCGGgUUCacCAGGUaGCAGCUGCuCa -3'
miRNA:   3'- -ACGCCgAAGcaGUCCG-CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 70128 0.76 0.218275
Target:  5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3'
miRNA:   3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 71227 0.67 0.676392
Target:  5'- gGCGGCcgCGa-GGGCGCGGCggGgACg -3'
miRNA:   3'- aCGCCGaaGCagUCCGCGUCGa-CgUG- -5'
21499 3' -59.1 NC_004812.1 + 71324 0.84 0.074129
Target:  5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3'
miRNA:   3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 71914 0.69 0.574921
Target:  5'- cGCGGCgcCG-CGGGCGCuGCaGCGg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 71968 0.67 0.666272
Target:  5'- cGUGGUggcCGUCuGGCGCGGCgucGC-Ca -3'
miRNA:   3'- aCGCCGaa-GCAGuCCGCGUCGa--CGuG- -5'
21499 3' -59.1 NC_004812.1 + 72236 0.67 0.696517
Target:  5'- cUGCGGCggggCGUCcGGU-CGGCggGCGCg -3'
miRNA:   3'- -ACGCCGaa--GCAGuCCGcGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 72846 0.68 0.615426
Target:  5'- aGCGGCcgccggCGaUCAGcGCggacagcgcggGCAGCUGCGCc -3'
miRNA:   3'- aCGCCGaa----GC-AGUC-CG-----------CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 74062 0.66 0.755321
Target:  5'- gGCGGCagCGgCGGGCGCGcGCggGC-Cg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGU-CGa-CGuG- -5'
21499 3' -59.1 NC_004812.1 + 74155 0.66 0.764798
Target:  5'- aGCGGCguucCGUCcgGGGUcagGUAGCUGguCg -3'
miRNA:   3'- aCGCCGaa--GCAG--UCCG---CGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 75482 0.69 0.564879
Target:  5'- cGCGGCcgCGgcCAGGUcCAGCgGCACg -3'
miRNA:   3'- aCGCCGaaGCa-GUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 75545 0.66 0.745736
Target:  5'- cGUGGCcgagUUCGUCcGG-G-AGCUGCACg -3'
miRNA:   3'- aCGCCG----AAGCAGuCCgCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 75582 0.67 0.716427
Target:  5'- aUGgGGCUUCaGUCGGaccGCGC-GCUGguCg -3'
miRNA:   3'- -ACgCCGAAG-CAGUC---CGCGuCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 75825 0.72 0.414001
Target:  5'- gGCGGCagCGcCGGGUGguGCUGguCu -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCguCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 76120 0.66 0.755321
Target:  5'- gGCGGCcucgagcUCGUCGGcGCGCcGCcGCGu -3'
miRNA:   3'- aCGCCGa------AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 76822 0.66 0.72628
Target:  5'- gGCGGCgcgcaccucCGg-GGGCGCGcCUGCGCg -3'
miRNA:   3'- aCGCCGaa-------GCagUCCGCGUcGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 76989 0.68 0.645958
Target:  5'- gGCGGCUUUGgccgCcucGGCGCGcGC-GCGCg -3'
miRNA:   3'- aCGCCGAAGCa---Gu--CCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 81640 0.68 0.625601
Target:  5'- cGCGGCg-CGUCuucgAGGCGCAcccgcugaccGCgGCGCg -3'
miRNA:   3'- aCGCCGaaGCAG----UCCGCGU----------CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 83196 0.67 0.666272
Target:  5'- cGCGGCg--Gg-AGGCGCGGCggccGCGCu -3'
miRNA:   3'- aCGCCGaagCagUCCGCGUCGa---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.