Results 41 - 60 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 129095 | 0.69 | 0.585004 |
Target: 5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3' miRNA: 3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128982 | 0.66 | 0.745736 |
Target: 5'- gGCGGUcgcgcCGUCA-GCGCGGCgggccgcggGCGCg -3' miRNA: 3'- aCGCCGaa---GCAGUcCGCGUCGa--------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128903 | 0.66 | 0.736053 |
Target: 5'- gGCGGCggCGgaGGGCGCcggcguguGGCUGgGCc -3' miRNA: 3'- aCGCCGaaGCagUCCGCG--------UCGACgUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128752 | 0.67 | 0.686477 |
Target: 5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3' miRNA: 3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128706 | 0.7 | 0.48669 |
Target: 5'- gGCGGCggCG-C-GGCGCAGCgggcccgagGCGCg -3' miRNA: 3'- aCGCCGaaGCaGuCCGCGUCGa--------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128526 | 0.7 | 0.515483 |
Target: 5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3' miRNA: 3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128169 | 0.69 | 0.59512 |
Target: 5'- cGCGGCgcugCGUC-GGCGCcuGGCggagacGCACc -3' miRNA: 3'- aCGCCGaa--GCAGuCCGCG--UCGa-----CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128138 | 0.73 | 0.356169 |
Target: 5'- cGCGGCc----CAGGCGCGGCggcgGCGCg -3' miRNA: 3'- aCGCCGaagcaGUCCGCGUCGa---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128064 | 0.66 | 0.736053 |
Target: 5'- cGCGGCgcccgagGUCGGGcCGCucGCUGC-Cg -3' miRNA: 3'- aCGCCGaag----CAGUCC-GCGu-CGACGuG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128025 | 0.7 | 0.502917 |
Target: 5'- gGCGGCgcggcCGUCGagcgcgggcagcacGGCGCGGCgGUACu -3' miRNA: 3'- aCGCCGaa---GCAGU--------------CCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127973 | 0.67 | 0.716427 |
Target: 5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3' miRNA: 3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127926 | 0.68 | 0.626619 |
Target: 5'- cGCGGCcagcccccagcgcgCG-CAGGCGCGGUgcgagUGCGCc -3' miRNA: 3'- aCGCCGaa------------GCaGUCCGCGUCG-----ACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127858 | 0.74 | 0.311304 |
Target: 5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3' miRNA: 3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127761 | 0.69 | 0.594107 |
Target: 5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3' miRNA: 3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127696 | 0.68 | 0.615426 |
Target: 5'- gGCGGCgucgUCGUCGucGGCgaGCAGCgUGuCGCc -3' miRNA: 3'- aCGCCGa---AGCAGU--CCG--CGUCG-AC-GUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 126973 | 0.66 | 0.745736 |
Target: 5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3' miRNA: 3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 125216 | 0.71 | 0.449537 |
Target: 5'- gGCGGCcgugagUUCGggcagCAGGCGCGuGC-GCACg -3' miRNA: 3'- aCGCCG------AAGCa----GUCCGCGU-CGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 124238 | 0.66 | 0.745736 |
Target: 5'- gGCGGCgggccuggCGggGGGCGCGcGCggcgGCGCc -3' miRNA: 3'- aCGCCGaa------GCagUCCGCGU-CGa---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 124208 | 0.66 | 0.755321 |
Target: 5'- cGCGGCggCGaCcgAGGcCGCGGC-GCACc -3' miRNA: 3'- aCGCCGaaGCaG--UCC-GCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 124186 | 0.7 | 0.515483 |
Target: 5'- gGCGGCU-----GGGCGCGGCcGCGCc -3' miRNA: 3'- aCGCCGAagcagUCCGCGUCGaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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