miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 123503 0.67 0.676392
Target:  5'- aGCGGgggUCugggGUCGGGCGCcGGgaGCGCg -3'
miRNA:   3'- aCGCCga-AG----CAGUCCGCG-UCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 122954 0.68 0.635781
Target:  5'- gGCGGCgUUGcagagCGGGCaGCuGUUGCGCa -3'
miRNA:   3'- aCGCCGaAGCa----GUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 122535 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 122441 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 122364 0.7 0.505805
Target:  5'- aUGaCGGCgaccaugaggUCGUCcgAGGCGCcGUUGCGCu -3'
miRNA:   3'- -AC-GCCGa---------AGCAG--UCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 121716 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 119276 0.67 0.706503
Target:  5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 118793 0.68 0.615426
Target:  5'- -cCGGCccCG-CGGGCGCAGC-GCGCc -3'
miRNA:   3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 118667 0.67 0.720377
Target:  5'- cGCGGUccacagUCG-CGGcGCGCAGCUaucgaggaacccgcaGCGCg -3'
miRNA:   3'- aCGCCGa-----AGCaGUC-CGCGUCGA---------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 117627 0.72 0.422724
Target:  5'- gGCGGCgcgggcCGcCGGGCGCGGCgggGuCGCg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 117391 0.69 0.585004
Target:  5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 115485 0.66 0.72628
Target:  5'- gUGCGGCcgCGcCGGGCgGCGGCccgGCc- -3'
miRNA:   3'- -ACGCCGaaGCaGUCCG-CGUCGa--CGug -5'
21499 3' -59.1 NC_004812.1 + 114838 0.66 0.736053
Target:  5'- aGCGGC--CG--AGGCGCGGC-GCGCc -3'
miRNA:   3'- aCGCCGaaGCagUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 113055 0.72 0.405391
Target:  5'- cGCGGCcggCGUCGGcCGCGGCgGCAg -3'
miRNA:   3'- aCGCCGaa-GCAGUCcGCGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 112794 0.74 0.311304
Target:  5'- gGCGGCUccccCGUCGGGCGUgugGGC-GCGCc -3'
miRNA:   3'- aCGCCGAa---GCAGUCCGCG---UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 110507 0.69 0.544941
Target:  5'- aGgGGCUggCGUgCGGGCGCcuGCUGC-Cg -3'
miRNA:   3'- aCgCCGAa-GCA-GUCCGCGu-CGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 110360 0.66 0.755321
Target:  5'- cGCGGgUgaUCcaaCAGGCGguGCUGCu- -3'
miRNA:   3'- aCGCCgA--AGca-GUCCGCguCGACGug -5'
21499 3' -59.1 NC_004812.1 + 110275 0.69 0.585004
Target:  5'- gGCGGC-UCGUggCGGGCggacuggcgGCGGCUGuCGCc -3'
miRNA:   3'- aCGCCGaAGCA--GUCCG---------CGUCGAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 109916 0.7 0.500995
Target:  5'- aGCGGCUgcaCGUCGcgcugggccacuuccGGCGCGGCgcccuggcggccgugGCGCu -3'
miRNA:   3'- aCGCCGAa--GCAGU---------------CCGCGUCGa--------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 109483 0.69 0.59512
Target:  5'- cUGCGGCaUCGUgcGGCGgCuGCUGCGu -3'
miRNA:   3'- -ACGCCGaAGCAguCCGC-GuCGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.