miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 108759 0.69 0.574921
Target:  5'- cUGCGGCUggG--GGGCGCGGggGCGCc -3'
miRNA:   3'- -ACGCCGAagCagUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 107633 0.68 0.660187
Target:  5'- cUGCGGCcgCGUCgcggggcacgucgccGGGgGCGGCcggcaGCACg -3'
miRNA:   3'- -ACGCCGaaGCAG---------------UCCgCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 107564 0.68 0.615426
Target:  5'- cGCGGCUcaggaAGGCgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGAagcagUCCG-CGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 106773 0.76 0.240486
Target:  5'- aGgGGCggCGUCGGGCGgGGC-GCGCg -3'
miRNA:   3'- aCgCCGaaGCAGUCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 106494 0.66 0.736053
Target:  5'- cGUGGCUggggCG-CGGGUccGCGGCgcgggGCGCc -3'
miRNA:   3'- aCGCCGAa---GCaGUCCG--CGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 106451 0.66 0.72628
Target:  5'- gGCGGC--CGUCuccagcacGCGCuccAGCUGCGCg -3'
miRNA:   3'- aCGCCGaaGCAGuc------CGCG---UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 105869 0.68 0.645958
Target:  5'- gGaCGGCgggUCGUgGGcGCGCGG-UGCGCu -3'
miRNA:   3'- aC-GCCGa--AGCAgUC-CGCGUCgACGUG- -5'
21499 3' -59.1 NC_004812.1 + 103657 0.66 0.745736
Target:  5'- gGCgGGCcccUCGUCgaGGGC-CAGCUGgGCg -3'
miRNA:   3'- aCG-CCGa--AGCAG--UCCGcGUCGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 103630 0.69 0.59512
Target:  5'- cGCGGCgguagcucuccUCG-CGGGCGCGGagcucgGCGCg -3'
miRNA:   3'- aCGCCGa----------AGCaGUCCGCGUCga----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 103323 0.67 0.696517
Target:  5'- aGCGGCUggaaCAGGCacgaCAGCUGgCGCg -3'
miRNA:   3'- aCGCCGAagcaGUCCGc---GUCGAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 101955 0.7 0.515483
Target:  5'- gGCGGCgggCGUCAGGgGCcGCgGaCGCc -3'
miRNA:   3'- aCGCCGaa-GCAGUCCgCGuCGaC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 101122 0.66 0.736053
Target:  5'- cGCGGCcgUGUCGaacggcuucgcGGCGC-GCgUGCGCu -3'
miRNA:   3'- aCGCCGaaGCAGU-----------CCGCGuCG-ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 101066 0.66 0.745736
Target:  5'- gGUGGCcacguaCGUgAGGCGCGccGCgugGCGCa -3'
miRNA:   3'- aCGCCGaa----GCAgUCCGCGU--CGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 100513 0.74 0.314157
Target:  5'- aGCGGCguguaggcgcccaCGUCGGGCGCGGCgagGC-Cg -3'
miRNA:   3'- aCGCCGaa-----------GCAGUCCGCGUCGa--CGuG- -5'
21499 3' -59.1 NC_004812.1 + 100295 0.69 0.574921
Target:  5'- gGCGGCgcgCG-CGcGCGC-GCUGCGCg -3'
miRNA:   3'- aCGCCGaa-GCaGUcCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 99846 0.67 0.676392
Target:  5'- gGCgGGCUgcagcUCGUCGGaGCGCuGCcGCAg -3'
miRNA:   3'- aCG-CCGA-----AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 99405 0.69 0.564879
Target:  5'- gGCGGCUggggUCGUCgGGGCGCAuGaagaacaUGUACu -3'
miRNA:   3'- aCGCCGA----AGCAG-UCCGCGU-Cg------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 98881 0.7 0.515483
Target:  5'- cGaCGGCgucaUCGUCggaaagagGGGCGCGGUgGCGCg -3'
miRNA:   3'- aC-GCCGa---AGCAG--------UCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 98692 0.67 0.676392
Target:  5'- cGCGGUcgaaccgccgCGcCGGGgGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--------GCaGUCCgCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 98626 0.7 0.535056
Target:  5'- cGCGGC--CGUCGcGGcCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaaGCAGU-CC-GCGuCGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.