miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 99405 0.69 0.564879
Target:  5'- gGCGGCUggggUCGUCgGGGCGCAuGaagaacaUGUACu -3'
miRNA:   3'- aCGCCGA----AGCAG-UCCGCGU-Cg------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 122535 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 147839 0.69 0.564879
Target:  5'- cGCGGggUUGUCgAGGCucucGCGGCUGCc- -3'
miRNA:   3'- aCGCCgaAGCAG-UCCG----CGUCGACGug -5'
21499 3' -59.1 NC_004812.1 + 154833 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 56236 0.69 0.564879
Target:  5'- cGCGGCgcgccgacUCGUCcgcggGGGCGCGcccCUGCGCc -3'
miRNA:   3'- aCGCCGa-------AGCAG-----UCCGCGUc--GACGUG- -5'
21499 3' -59.1 NC_004812.1 + 108759 0.69 0.574921
Target:  5'- cUGCGGCUggG--GGGCGCGGggGCGCc -3'
miRNA:   3'- -ACGCCGAagCagUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 71914 0.69 0.574921
Target:  5'- cGCGGCgcCG-CGGGCGCuGCaGCGg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 152125 0.69 0.544941
Target:  5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3'
miRNA:   3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 110507 0.69 0.544941
Target:  5'- aGgGGCUggCGUgCGGGCGCcuGCUGC-Cg -3'
miRNA:   3'- aCgCCGAa-GCA-GUCCGCGu-CGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 98626 0.7 0.535056
Target:  5'- cGCGGC--CGUCGcGGcCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaaGCAGU-CC-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 20297 0.7 0.505805
Target:  5'- gGCGGCg-CG-CcGGCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGaaGCaGuCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 155108 0.7 0.505805
Target:  5'- cGCGGCggCG-CGGGC-CGGCcgGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCCGcGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 98881 0.7 0.515483
Target:  5'- cGaCGGCgucaUCGUCggaaagagGGGCGCGGUgGCGCg -3'
miRNA:   3'- aC-GCCGa---AGCAG--------UCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 101955 0.7 0.515483
Target:  5'- gGCGGCgggCGUCAGGgGCcGCgGaCGCc -3'
miRNA:   3'- aCGCCGaa-GCAGUCCgCGuCGaC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 122441 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 128526 0.7 0.515483
Target:  5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3'
miRNA:   3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 56898 0.7 0.525235
Target:  5'- gUGCGGCcagcccugggCG-CAGGCGCcGCcGCACg -3'
miRNA:   3'- -ACGCCGaa--------GCaGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 121716 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 7635 0.7 0.535056
Target:  5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3'
miRNA:   3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 147706 0.69 0.574921
Target:  5'- cGgGGg-UCGUguGGCGCggggGGCUGUACg -3'
miRNA:   3'- aCgCCgaAGCAguCCGCG----UCGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.