miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 48501 0.7 0.496206
Target:  5'- aGCGGC-UCGgcuccCAcGGCGCAGUUGguCa -3'
miRNA:   3'- aCGCCGaAGCa----GU-CCGCGUCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 4147 0.71 0.449537
Target:  5'- gGCGGC--CGcCAGGCgGC-GCUGCGCg -3'
miRNA:   3'- aCGCCGaaGCaGUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 2350 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 43849 0.79 0.157891
Target:  5'- cGCGGCgccgaCGUcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 41165 0.69 0.554884
Target:  5'- aGCGGCgcgcCGcCAGGCGCucucGGCgccGCGCc -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCG----UCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 146062 0.7 0.509667
Target:  5'- cGCGGCgcuacguggaccagUCGaCGGGCGCgAGCgaGCGCu -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCG-UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 146411 0.71 0.431555
Target:  5'- cGCGGCcagcuccgCGUCGGGgcaGCAGUUGCGa -3'
miRNA:   3'- aCGCCGaa------GCAGUCCg--CGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 30944 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 122364 0.7 0.505805
Target:  5'- aUGaCGGCgaccaugaggUCGUCcgAGGCGCcGUUGCGCu -3'
miRNA:   3'- -AC-GCCGa---------AGCAG--UCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 71324 0.84 0.074129
Target:  5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3'
miRNA:   3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 156117 0.71 0.449537
Target:  5'- gGCGGCcgugagUUCGggcagCAGGCGCGuGC-GCACg -3'
miRNA:   3'- aCGCCG------AAGCa----GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 135813 0.7 0.496206
Target:  5'- gUGCGGCg--GcCuGGCGCAGCgccUGCGCu -3'
miRNA:   3'- -ACGCCGaagCaGuCCGCGUCG---ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 18819 0.72 0.396894
Target:  5'- gGCGGgUgugCGgCGGGCgGCGGUUGCGCg -3'
miRNA:   3'- aCGCCgAa--GCaGUCCG-CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 3876 0.74 0.314157
Target:  5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 14363 0.75 0.258358
Target:  5'- uUGcCGGCcgCG-CGGGCGCGGCgGCGCa -3'
miRNA:   3'- -AC-GCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 70128 0.76 0.218275
Target:  5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3'
miRNA:   3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 100295 0.69 0.574921
Target:  5'- gGCGGCgcgCG-CGcGCGC-GCUGCGCg -3'
miRNA:   3'- aCGCCGaa-GCaGUcCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 29325 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 152617 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3017 0.7 0.515483
Target:  5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3'
miRNA:   3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.