Results 41 - 60 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 26617 | 0.69 | 0.544941 |
Target: 5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3' miRNA: 3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 146411 | 0.71 | 0.431555 |
Target: 5'- cGCGGCcagcuccgCGUCGGGgcaGCAGUUGCGa -3' miRNA: 3'- aCGCCGaa------GCAGUCCg--CGUCGACGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 30944 | 0.79 | 0.150063 |
Target: 5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3' miRNA: 3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 38536 | 0.7 | 0.535056 |
Target: 5'- cGCGGCggccgggGUCgGGGCGCgaAGCUGCGg -3' miRNA: 3'- aCGCCGaag----CAG-UCCGCG--UCGACGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 71324 | 0.84 | 0.074129 |
Target: 5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3' miRNA: 3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 131489 | 0.68 | 0.635781 |
Target: 5'- aGCGGCgucgCGUCGGacGUGCuGCUGUucgGCg -3' miRNA: 3'- aCGCCGaa--GCAGUC--CGCGuCGACG---UG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 70128 | 0.76 | 0.218275 |
Target: 5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3' miRNA: 3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 17970 | 0.68 | 0.625601 |
Target: 5'- gGCGGC--CGUCAGGCGCccgacguggAGcCUGuCGCc -3' miRNA: 3'- aCGCCGaaGCAGUCCGCG---------UC-GAC-GUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 107564 | 0.68 | 0.615426 |
Target: 5'- cGCGGCUcaggaAGGCgGCGGCgGCGCg -3' miRNA: 3'- aCGCCGAagcagUCCG-CGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 2253 | 0.69 | 0.594107 |
Target: 5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3' miRNA: 3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 55374 | 0.69 | 0.585004 |
Target: 5'- cUGCGGCc-CGUCgAGGC-CGGCgcgGCGCc -3' miRNA: 3'- -ACGCCGaaGCAG-UCCGcGUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 100295 | 0.69 | 0.574921 |
Target: 5'- gGCGGCgcgCG-CGcGCGC-GCUGCGCg -3' miRNA: 3'- aCGCCGaa-GCaGUcCGCGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 29325 | 0.69 | 0.564879 |
Target: 5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3' miRNA: 3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 124186 | 0.7 | 0.515483 |
Target: 5'- gGCGGCU-----GGGCGCGGCcGCGCc -3' miRNA: 3'- aCGCCGAagcagUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 122364 | 0.7 | 0.505805 |
Target: 5'- aUGaCGGCgaccaugaggUCGUCcgAGGCGCcGUUGCGCu -3' miRNA: 3'- -AC-GCCGa---------AGCAG--UCCGCGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 48501 | 0.7 | 0.496206 |
Target: 5'- aGCGGC-UCGgcuccCAcGGCGCAGUUGguCa -3' miRNA: 3'- aCGCCGaAGCa----GU-CCGCGUCGACguG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 4147 | 0.71 | 0.449537 |
Target: 5'- gGCGGC--CGcCAGGCgGC-GCUGCGCg -3' miRNA: 3'- aCGCCGaaGCaGUCCG-CGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 18819 | 0.72 | 0.396894 |
Target: 5'- gGCGGgUgugCGgCGGGCgGCGGUUGCGCg -3' miRNA: 3'- aCGCCgAa--GCaGUCCG-CGUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 3876 | 0.74 | 0.314157 |
Target: 5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3' miRNA: 3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 14363 | 0.75 | 0.258358 |
Target: 5'- uUGcCGGCcgCG-CGGGCGCGGCgGCGCa -3' miRNA: 3'- -AC-GCCGaaGCaGUCCGCGUCGaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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