miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 29325 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 35922 0.69 0.585004
Target:  5'- gGCGGCaguggggCGgCAGGCGgGGCaGCGCc -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 23498 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 18435 0.74 0.290534
Target:  5'- cGCGGCgggggccgCGUCcgguGGCGCGGCggggggGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGu---CCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 31472 0.74 0.317751
Target:  5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3'
miRNA:   3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 4408 0.72 0.414001
Target:  5'- gGCGGCcauggCGUagccCAGGUGCGGCacgGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA----GUCCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 38827 0.71 0.467924
Target:  5'- cUGCGGCgcgCG-CcGGCGCGGCcgggggGCGCg -3'
miRNA:   3'- -ACGCCGaa-GCaGuCCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 135813 0.7 0.496206
Target:  5'- gUGCGGCg--GcCuGGCGCAGCgccUGCGCu -3'
miRNA:   3'- -ACGCCGaagCaGuCCGCGUCG---ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 146062 0.7 0.509667
Target:  5'- cGCGGCgcuacguggaccagUCGaCGGGCGCgAGCgaGCGCu -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCG-UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 150177 0.67 0.706503
Target:  5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 149695 0.67 0.696517
Target:  5'- -cCGGCc-CG-CGGGCGCAGC-GCGCc -3'
miRNA:   3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 148292 0.69 0.585004
Target:  5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 57962 0.68 0.605263
Target:  5'- cGCGuGCgcgCGUCgcgcccGGGCGCAGCgcgGcCGCg -3'
miRNA:   3'- aCGC-CGaa-GCAG------UCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 17970 0.68 0.625601
Target:  5'- gGCGGC--CGUCAGGCGCccgacguggAGcCUGuCGCc -3'
miRNA:   3'- aCGCCGaaGCAGUCCGCG---------UC-GAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 131489 0.68 0.635781
Target:  5'- aGCGGCgucgCGUCGGacGUGCuGCUGUucgGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUC--CGCGuCGACG---UG- -5'
21499 3' -59.1 NC_004812.1 + 137984 0.68 0.656125
Target:  5'- gGCGGCcgCGUCuGGgGCGuGCUGaACg -3'
miRNA:   3'- aCGCCGaaGCAGuCCgCGU-CGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 19859 0.67 0.666272
Target:  5'- gGCGGUccucUUCGUCccGGGCGUcGUggGCGCg -3'
miRNA:   3'- aCGCCG----AAGCAG--UCCGCGuCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 135203 0.67 0.684463
Target:  5'- cGCuGCgacgCGUCGGcGCGCGGCgagacggccgcgGCGCg -3'
miRNA:   3'- aCGcCGaa--GCAGUC-CGCGUCGa-----------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3244 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.