miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 128169 0.69 0.59512
Target:  5'- cGCGGCgcugCGUC-GGCGCcuGGCggagacGCACc -3'
miRNA:   3'- aCGCCGaa--GCAGuCCGCG--UCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 142260 0.68 0.615426
Target:  5'- cGCGGCaaccaCGUgCAGGCGCAGgUggggcaGCACc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCgA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 81640 0.68 0.625601
Target:  5'- cGCGGCg-CGUCuucgAGGCGCAcccgcugaccGCgGCGCg -3'
miRNA:   3'- aCGCCGaaGCAG----UCCGCGU----------CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 105869 0.68 0.645958
Target:  5'- gGaCGGCgggUCGUgGGcGCGCGG-UGCGCu -3'
miRNA:   3'- aC-GCCGa--AGCAgUC-CGCGUCgACGUG- -5'
21499 3' -59.1 NC_004812.1 + 107633 0.68 0.660187
Target:  5'- cUGCGGCcgCGUCgcggggcacgucgccGGGgGCGGCcggcaGCACg -3'
miRNA:   3'- -ACGCCGaaGCAG---------------UCCgCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 135203 0.67 0.684463
Target:  5'- cGCuGCgacgCGUCGGcGCGCGGCgagacggccgcgGCGCg -3'
miRNA:   3'- aCGcCGaa--GCAGUC-CGCGUCGa-----------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3244 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 146062 0.7 0.509667
Target:  5'- cGCGGCgcuacguggaccagUCGaCGGGCGCgAGCgaGCGCu -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCG-UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 135813 0.7 0.496206
Target:  5'- gUGCGGCg--GcCuGGCGCAGCgccUGCGCu -3'
miRNA:   3'- -ACGCCGaagCaGuCCGCGUCG---ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 149568 0.67 0.720377
Target:  5'- cGCGGUccacagUCG-CGGcGCGCAGCUaucgaggaacccgcaGCGCg -3'
miRNA:   3'- aCGCCGa-----AGCaGUC-CGCGUCGA---------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 152649 0.66 0.730199
Target:  5'- cGCGGCgggggggCGcCGGGCcuccgggaggcggggGCAGCgaggGCGCu -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCG---------------CGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 14923 0.66 0.736053
Target:  5'- cGCGGUcUCGaaggCGGGCGCG--UGCAUg -3'
miRNA:   3'- aCGCCGaAGCa---GUCCGCGUcgACGUG- -5'
21499 3' -59.1 NC_004812.1 + 101122 0.66 0.736053
Target:  5'- cGCGGCcgUGUCGaacggcuucgcGGCGC-GCgUGCGCu -3'
miRNA:   3'- aCGCCGaaGCAGU-----------CCGCGuCG-ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 124238 0.66 0.745736
Target:  5'- gGCGGCgggccuggCGggGGGCGCGcGCggcgGCGCc -3'
miRNA:   3'- aCGCCGaa------GCagUCCGCGU-CGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 23498 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 18435 0.74 0.290534
Target:  5'- cGCGGCgggggccgCGUCcgguGGCGCGGCggggggGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGu---CCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 31472 0.74 0.317751
Target:  5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3'
miRNA:   3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 4408 0.72 0.414001
Target:  5'- gGCGGCcauggCGUagccCAGGUGCGGCacgGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA----GUCCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 38827 0.71 0.467924
Target:  5'- cUGCGGCgcgCG-CcGGCGCGGCcgggggGCGCg -3'
miRNA:   3'- -ACGCCGaa-GCaGuCCGCGUCGa-----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.