miRNA display CGI


Results 101 - 120 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 142260 0.68 0.615426
Target:  5'- cGCGGCaaccaCGUgCAGGCGCAGgUggggcaGCACc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCgA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 146062 0.7 0.509667
Target:  5'- cGCGGCgcuacguggaccagUCGaCGGGCGCgAGCgaGCGCu -3'
miRNA:   3'- aCGCCGa-------------AGCaGUCCGCG-UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 4408 0.72 0.414001
Target:  5'- gGCGGCcauggCGUagccCAGGUGCGGCacgGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA----GUCCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 38827 0.71 0.467924
Target:  5'- cUGCGGCgcgCG-CcGGCGCGGCcgggggGCGCg -3'
miRNA:   3'- -ACGCCGaa-GCaGuCCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 135813 0.7 0.496206
Target:  5'- gUGCGGCg--GcCuGGCGCAGCgccUGCGCu -3'
miRNA:   3'- -ACGCCGaagCaGuCCGCGUCG---ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 153436 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 89260 0.66 0.745736
Target:  5'- cGCaGGCgugggacgCG-CAGGcCGCGGCgcgGCGCg -3'
miRNA:   3'- aCG-CCGaa------GCaGUCC-GCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3587 0.69 0.585004
Target:  5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3'
miRNA:   3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 110275 0.69 0.585004
Target:  5'- gGCGGC-UCGUggCGGGCggacuggcgGCGGCUGuCGCc -3'
miRNA:   3'- aCGCCGaAGCA--GUCCG---------CGUCGAC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 128169 0.69 0.59512
Target:  5'- cGCGGCgcugCGUC-GGCGCcuGGCggagacGCACc -3'
miRNA:   3'- aCGCCGaa--GCAGuCCGCG--UCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 31472 0.74 0.317751
Target:  5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3'
miRNA:   3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 54381 0.66 0.764798
Target:  5'- -cUGGC--CGUCGGGCGCccGCggGCACg -3'
miRNA:   3'- acGCCGaaGCAGUCCGCGu-CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 16888 0.68 0.613392
Target:  5'- cGUGGCcgaGgccaucagccacCAGGCGCuGCUGCGCa -3'
miRNA:   3'- aCGCCGaagCa-----------GUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 6906 0.68 0.615426
Target:  5'- gGUGGUcUCG--GGGCGC-GCUGCGCc -3'
miRNA:   3'- aCGCCGaAGCagUCCGCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 21188 0.68 0.615426
Target:  5'- cGCGGagggCGUcCAGGUGCGcGCcGCGCa -3'
miRNA:   3'- aCGCCgaa-GCA-GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 24844 0.72 0.380247
Target:  5'- cGCGGCacgCGcCGcgggcGGCGCGGCUGCGg -3'
miRNA:   3'- aCGCCGaa-GCaGU-----CCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 72846 0.68 0.615426
Target:  5'- aGCGGCcgccggCGaUCAGcGCggacagcgcggGCAGCUGCGCc -3'
miRNA:   3'- aCGCCGaa----GC-AGUC-CG-----------CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 98881 0.7 0.515483
Target:  5'- cGaCGGCgucaUCGUCggaaagagGGGCGCGGUgGCGCg -3'
miRNA:   3'- aC-GCCGa---AGCAG--------UCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 101955 0.7 0.515483
Target:  5'- gGCGGCgggCGUCAGGgGCcGCgGaCGCc -3'
miRNA:   3'- aCGCCGaa-GCAGUCCgCGuCGaC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.