Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 75545 | 0.66 | 0.745736 |
Target: 5'- cGUGGCcgagUUCGUCcGG-G-AGCUGCACg -3' miRNA: 3'- aCGCCG----AAGCAGuCCgCgUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 124238 | 0.66 | 0.745736 |
Target: 5'- gGCGGCgggccuggCGggGGGCGCGcGCggcgGCGCc -3' miRNA: 3'- aCGCCGaa------GCagUCCGCGU-CGa---CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 35408 | 0.66 | 0.745736 |
Target: 5'- gGCGGCaugcugUUCGaccaGGGCGCGcuGCUGgGCg -3' miRNA: 3'- aCGCCG------AAGCag--UCCGCGU--CGACgUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 103657 | 0.66 | 0.745736 |
Target: 5'- gGCgGGCcccUCGUCgaGGGC-CAGCUGgGCg -3' miRNA: 3'- aCG-CCGa--AGCAG--UCCGcGUCGACgUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 89260 | 0.66 | 0.745736 |
Target: 5'- cGCaGGCgugggacgCG-CAGGcCGCGGCgcgGCGCg -3' miRNA: 3'- aCG-CCGaa------GCaGUCC-GCGUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 1465 | 0.66 | 0.745736 |
Target: 5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3' miRNA: 3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 101066 | 0.66 | 0.745736 |
Target: 5'- gGUGGCcacguaCGUgAGGCGCGccGCgugGCGCa -3' miRNA: 3'- aCGCCGaa----GCAgUCCGCGU--CGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 46306 | 0.66 | 0.745736 |
Target: 5'- cGCGGCgggccgCG-CGGGCGaCAGCcGC-Cg -3' miRNA: 3'- aCGCCGaa----GCaGUCCGC-GUCGaCGuG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 4507 | 0.66 | 0.745736 |
Target: 5'- gGCGGCaugcugUUCGaccaGGGCGCGcuGCUGgGCg -3' miRNA: 3'- aCGCCG------AAGCag--UCCGCGU--CGACgUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 126973 | 0.66 | 0.745736 |
Target: 5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3' miRNA: 3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 67531 | 0.66 | 0.745736 |
Target: 5'- cUGUGGUccaCGUacgGGGCGCGGUcgGCGCa -3' miRNA: 3'- -ACGCCGaa-GCAg--UCCGCGUCGa-CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 3474 | 0.66 | 0.745736 |
Target: 5'- gGCGGUcgcgcCGUCA-GCGCGGCgggccgcggGCGCg -3' miRNA: 3'- aCGCCGaa---GCAGUcCGCGUCGa--------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 3710 | 0.66 | 0.736053 |
Target: 5'- gGCGGCggCGgcgCcGGCGgAGC-GCACc -3' miRNA: 3'- aCGCCGaaGCa--GuCCGCgUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 114838 | 0.66 | 0.736053 |
Target: 5'- aGCGGC--CG--AGGCGCGGC-GCGCc -3' miRNA: 3'- aCGCCGaaGCagUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 32487 | 0.66 | 0.736053 |
Target: 5'- cGCGGCc-CGUCGgcGGCGUaccgcguugucGGCgGCACg -3' miRNA: 3'- aCGCCGaaGCAGU--CCGCG-----------UCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128903 | 0.66 | 0.736053 |
Target: 5'- gGCGGCggCGgaGGGCGCcggcguguGGCUGgGCc -3' miRNA: 3'- aCGCCGaaGCagUCCGCG--------UCGACgUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 89753 | 0.66 | 0.736053 |
Target: 5'- gUGCGGCaacgagUUCGggGGGCGgGuCUGCACc -3' miRNA: 3'- -ACGCCG------AAGCagUCCGCgUcGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 106494 | 0.66 | 0.736053 |
Target: 5'- cGUGGCUggggCG-CGGGUccGCGGCgcgggGCGCc -3' miRNA: 3'- aCGCCGAa---GCaGUCCG--CGUCGa----CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 66556 | 0.66 | 0.736053 |
Target: 5'- cGCugGGCUccagUCGgcggaGGGacgaGCGGCUGCGCg -3' miRNA: 3'- aCG--CCGA----AGCag---UCCg---CGUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 128064 | 0.66 | 0.736053 |
Target: 5'- cGCGGCgcccgagGUCGGGcCGCucGCUGC-Cg -3' miRNA: 3'- aCGCCGaag----CAGUCC-GCGu-CGACGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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