miRNA display CGI


Results 41 - 60 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 43842 0.66 0.940319
Target:  5'- -cGCGGCucGCGGCGcCGACGuccgGGCgCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGU-GCUGCu---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 141762 0.66 0.940319
Target:  5'- -gGCGGCcGCGGgGCGGCGucGAACg-- -3'
miRNA:   3'- gaCGCCGuCGUCgUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 97169 0.66 0.935484
Target:  5'- -cGCGaccgaGCGGguG-AUGGCGGAGCUCGa -3'
miRNA:   3'- gaCGC-----CGUCguCgUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 106723 0.66 0.935484
Target:  5'- gCUGCuGGCgGGCgAGgGCGACGAGGCc-- -3'
miRNA:   3'- -GACG-CCG-UCG-UCgUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 66008 0.66 0.949272
Target:  5'- -cGCGGuCAGCAuGCGauCGAUGAGGCg-- -3'
miRNA:   3'- gaCGCC-GUCGU-CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 36160 0.66 0.925086
Target:  5'- -gGCGGCgcagGGguGCGCGGgGucGCUCu -3'
miRNA:   3'- gaCGCCG----UCguCGUGCUgCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 147633 0.66 0.949272
Target:  5'- uCUGCGcGcCAGUgGGCGCGACGA--UUCGu -3'
miRNA:   3'- -GACGC-C-GUCG-UCGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 37399 0.66 0.925086
Target:  5'- gUGCaGCAGCGGCcGCG-CGAGAaggCGg -3'
miRNA:   3'- gACGcCGUCGUCG-UGCuGCUUUga-GC- -5'
21499 5' -54.8 NC_004812.1 + 55887 0.66 0.925086
Target:  5'- gUGUGGUcGUAGCACGcGCGGAugagggcCUCGa -3'
miRNA:   3'- gACGCCGuCGUCGUGC-UGCUUu------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 132877 0.66 0.944915
Target:  5'- aUGUGGCGGaagaAGCGgGuGCGguGCUCGc -3'
miRNA:   3'- gACGCCGUCg---UCGUgC-UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 18435 0.66 0.939847
Target:  5'- -cGCGGCgggggccgcguccGGUGGCGCGGCGGgggGGCgCGg -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCU---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 122821 0.66 0.940319
Target:  5'- -gGCGGC-GCAGCG-GGCG-AugUCGu -3'
miRNA:   3'- gaCGCCGuCGUCGUgCUGCuUugAGC- -5'
21499 5' -54.8 NC_004812.1 + 66706 0.66 0.949272
Target:  5'- -cGCGGCGaaGGaCGCGGCGAAGaagaugccCUCGa -3'
miRNA:   3'- gaCGCCGUcgUC-GUGCUGCUUU--------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 81439 0.66 0.930406
Target:  5'- -aGCGGCA--GGCGCGgaGCGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUcgUCGUGC--UGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 152083 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 16701 0.66 0.948847
Target:  5'- --cCGGCGGguGCGCGagcgaccGCGggGC-CGg -3'
miRNA:   3'- gacGCCGUCguCGUGC-------UGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 88105 0.66 0.940319
Target:  5'- -cGCGaCAGCAGCACGcaguCGggGaUCGc -3'
miRNA:   3'- gaCGCcGUCGUCGUGCu---GCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 31648 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 35474 0.66 0.949272
Target:  5'- -cGCGGCGuCGGCGCG-CGAGAUcccCGa -3'
miRNA:   3'- gaCGCCGUcGUCGUGCuGCUUUGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.