miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 130411 0.66 0.949272
Target:  5'- -gGCGGC-GCGcGCGCGcCGccGCUCGc -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 115237 0.66 0.940319
Target:  5'- uUGgGGguGguGCACcaACGAGGcCUCGg -3'
miRNA:   3'- gACgCCguCguCGUGc-UGCUUU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 26199 0.66 0.946686
Target:  5'- -gGCGGCGcGUAGUccGCcagcaggcucugggaGGCGGGACUCGa -3'
miRNA:   3'- gaCGCCGU-CGUCG--UG---------------CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 31648 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 35474 0.66 0.949272
Target:  5'- -cGCGGCGuCGGCGCG-CGAGAUcccCGa -3'
miRNA:   3'- gaCGCCGUcGUCGUGCuGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 66008 0.66 0.949272
Target:  5'- -cGCGGuCAGCAuGCGauCGAUGAGGCg-- -3'
miRNA:   3'- gaCGCC-GUCGU-CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 18853 0.66 0.925086
Target:  5'- --cCGGUGGCGGUACuGCGAAACgaggCGg -3'
miRNA:   3'- gacGCCGUCGUCGUGcUGCUUUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 119492 0.67 0.913718
Target:  5'- -cGCGGCGGCAgGgGCGGCGuccg-CGg -3'
miRNA:   3'- gaCGCCGUCGU-CgUGCUGCuuugaGC- -5'
21499 5' -54.8 NC_004812.1 + 59256 0.67 0.901388
Target:  5'- gCUGCuuGGCGGCGGUGCG-CGGGAUcagggUCGc -3'
miRNA:   3'- -GACG--CCGUCGUCGUGCuGCUUUG-----AGC- -5'
21499 5' -54.8 NC_004812.1 + 87726 0.67 0.901388
Target:  5'- -aGCGGgaGGCGGCGCGGgcgcCGggGCcgCGg -3'
miRNA:   3'- gaCGCCg-UCGUCGUGCU----GCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 121973 0.67 0.917807
Target:  5'- -aGCGGCgGGCcugggcugggccugAGCGCcgGGCGGGACUUGg -3'
miRNA:   3'- gaCGCCG-UCG--------------UCGUG--CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 92503 0.67 0.919523
Target:  5'- -gGCGGCGGCccGGCuuccgggguccgGCGACGAu-UUCGa -3'
miRNA:   3'- gaCGCCGUCG--UCG------------UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100789 0.67 0.919523
Target:  5'- gUGCGGUGGCGGCcuCGGgccCGAAGacCUCGu -3'
miRNA:   3'- gACGCCGUCGUCGu-GCU---GCUUU--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 96760 0.67 0.919523
Target:  5'- gUGCGGCGcGCcGuCGCGAgGAGGCggCGg -3'
miRNA:   3'- gACGCCGU-CGuC-GUGCUgCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 71871 0.67 0.894867
Target:  5'- cCUGCaGgAGCGcgcGCACGGCGc-GCUCGg -3'
miRNA:   3'- -GACGcCgUCGU---CGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 64585 0.67 0.919523
Target:  5'- -cGgGGguGCAGCACGGCcu-GCUg- -3'
miRNA:   3'- gaCgCCguCGUCGUGCUGcuuUGAgc -5'
21499 5' -54.8 NC_004812.1 + 37740 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 24844 0.67 0.901388
Target:  5'- -cGCGGCacgcgccgcgGGCGGCGCGgcuGCGggGgcgucCUCGa -3'
miRNA:   3'- gaCGCCG----------UCGUCGUGC---UGCuuU-----GAGC- -5'
21499 5' -54.8 NC_004812.1 + 22916 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 109321 0.67 0.916069
Target:  5'- -gGCGGCgcuggaGGCGGCGCcGCGcuaccggggcgccguAGACUCGg -3'
miRNA:   3'- gaCGCCG------UCGUCGUGcUGC---------------UUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.