miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 89275 0.67 0.919523
Target:  5'- -cGCaGGCcGCGGCGCGgcGCGGAGCccCGg -3'
miRNA:   3'- gaCG-CCGuCGUCGUGC--UGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 50441 0.67 0.913718
Target:  5'- cCUGCGGCgcgaGGCcGC-CGAgGccGAGCUCGg -3'
miRNA:   3'- -GACGCCG----UCGuCGuGCUgC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 155816 0.67 0.901388
Target:  5'- -gGCGGCGGCgGGgGCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCG-UCgUGCUGCUuu---GAGc -5'
21499 5' -54.8 NC_004812.1 + 92503 0.67 0.919523
Target:  5'- -gGCGGCGGCccGGCuuccgggguccgGCGACGAu-UUCGa -3'
miRNA:   3'- gaCGCCGUCG--UCG------------UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100789 0.67 0.919523
Target:  5'- gUGCGGUGGCGGCcuCGGgccCGAAGacCUCGu -3'
miRNA:   3'- gACGCCGUCGUCGu-GCU---GCUUU--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 130857 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 115805 0.67 0.913718
Target:  5'- -aGCGGCAGCcGUugugaGGCGAGGCggcCGg -3'
miRNA:   3'- gaCGCCGUCGuCGug---CUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 88727 0.67 0.901388
Target:  5'- gCUGCGcCAG-AGCAUGAUGAAGCaCGg -3'
miRNA:   3'- -GACGCcGUCgUCGUGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 77440 0.67 0.901388
Target:  5'- -aGCucccGCAGCAGCuCGGCcggGggGCUCGu -3'
miRNA:   3'- gaCGc---CGUCGUCGuGCUG---CuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 27432 0.67 0.901388
Target:  5'- uUGCaGGgagaagccCAGUAGCACGAUGAGGC-CGc -3'
miRNA:   3'- gACG-CC--------GUCGUCGUGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 128222 0.67 0.894867
Target:  5'- -cGCGGCcggaGGcCAGCACGGCGcgGCg-- -3'
miRNA:   3'- gaCGCCG----UC-GUCGUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 28843 0.67 0.894867
Target:  5'- gCUGCGGgGGCGGgACuuugggGGCGAccgcgcgaccaAGCUCGa -3'
miRNA:   3'- -GACGCCgUCGUCgUG------CUGCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 19034 0.67 0.894867
Target:  5'- -cGCgGGCGGCAGCcucucggccgcgGCGGcCGAGACcgCGg -3'
miRNA:   3'- gaCG-CCGUCGUCG------------UGCU-GCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 106589 0.67 0.907672
Target:  5'- -gGC-GCAGaCGGCGCGAUGGAGuCUCc -3'
miRNA:   3'- gaCGcCGUC-GUCGUGCUGCUUU-GAGc -5'
21499 5' -54.8 NC_004812.1 + 5349 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 17530 0.67 0.910119
Target:  5'- -cGCGGCGGaaGGgGCGACGGucggggcggacgcugGGCUCGc -3'
miRNA:   3'- gaCGCCGUCg-UCgUGCUGCU---------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 151289 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 135608 0.67 0.919523
Target:  5'- -cGCGGCcgaggcgcGGCGGCgACGACGucgUUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCG-UGCUGCuuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 25781 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 87726 0.67 0.901388
Target:  5'- -aGCGGgaGGCGGCGCGGgcgcCGggGCcgCGg -3'
miRNA:   3'- gaCGCCg-UCGUCGUGCU----GCuuUGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.