miRNA display CGI


Results 101 - 120 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 100789 0.67 0.919523
Target:  5'- gUGCGGUGGCGGCcuCGGgccCGAAGacCUCGu -3'
miRNA:   3'- gACGCCGUCGUCGu-GCU---GCUUU--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 9089 0.67 0.894867
Target:  5'- ---aGGCGGCGGCGCGAagaCGGcgcCUCGg -3'
miRNA:   3'- gacgCCGUCGUCGUGCU---GCUuu-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 96760 0.67 0.919523
Target:  5'- gUGCGGCGcGCcGuCGCGAgGAGGCggCGg -3'
miRNA:   3'- gACGCCGU-CGuC-GUGCUgCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 135608 0.67 0.919523
Target:  5'- -cGCGGCcgaggcgcGGCGGCgACGACGucgUUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCG-UGCUGCuuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 151289 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 43626 0.67 0.894867
Target:  5'- -gGCGGCcGCGGCGCcGCGAuccaUCGc -3'
miRNA:   3'- gaCGCCGuCGUCGUGcUGCUuug-AGC- -5'
21499 5' -54.8 NC_004812.1 + 139785 0.67 0.894867
Target:  5'- -gGCGGCGGCcGCcgucuccuccuCGGCGggGgUCGa -3'
miRNA:   3'- gaCGCCGUCGuCGu----------GCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 22916 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 35581 0.67 0.913718
Target:  5'- -gGCGGCGGgGGCAccCGACGGcGAC-CGc -3'
miRNA:   3'- gaCGCCGUCgUCGU--GCUGCU-UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 136441 0.67 0.919523
Target:  5'- -gGCGGCccGGCGGCACcgcaGGCGAAuccGCgCGg -3'
miRNA:   3'- gaCGCCG--UCGUCGUG----CUGCUU---UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 115805 0.67 0.913718
Target:  5'- -aGCGGCAGCcGUugugaGGCGAGGCggcCGg -3'
miRNA:   3'- gaCGCCGUCGuCGug---CUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 146428 0.67 0.913718
Target:  5'- -cGgGGCAGCAGUugcgaaccGCGGCGAggAugUUGc -3'
miRNA:   3'- gaCgCCGUCGUCG--------UGCUGCU--UugAGC- -5'
21499 5' -54.8 NC_004812.1 + 17530 0.67 0.910119
Target:  5'- -cGCGGCGGaaGGgGCGACGGucggggcggacgcugGGCUCGc -3'
miRNA:   3'- gaCGCCGUCg-UCgUGCUGCU---------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 87843 0.67 0.907672
Target:  5'- -cGCGaGCAGCucggcgugcgcGCACGACGGcgUUCGc -3'
miRNA:   3'- gaCGC-CGUCGu----------CGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 5349 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 37740 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 98241 0.67 0.901388
Target:  5'- -cGCGG-GGCGGCGCGGCccugGAGGC-CGg -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUG----CUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 109863 0.67 0.907672
Target:  5'- -gGCGGCAGUGGCaAUGGCcagcGCUCa -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGcuu-UGAGc -5'
21499 5' -54.8 NC_004812.1 + 155816 0.67 0.901388
Target:  5'- -gGCGGCGGCgGGgGCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCG-UCgUGCUGCUuu---GAGc -5'
21499 5' -54.8 NC_004812.1 + 87726 0.67 0.901388
Target:  5'- -aGCGGgaGGCGGCGCGGgcgcCGggGCcgCGg -3'
miRNA:   3'- gaCGCCg-UCGUCGUGCU----GCuuUGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.