miRNA display CGI


Results 121 - 140 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 25781 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 43626 0.67 0.894867
Target:  5'- -gGCGGCcGCGGCGCcGCGAuccaUCGc -3'
miRNA:   3'- gaCGCCGuCGUCGUGcUGCUuug-AGC- -5'
21499 5' -54.8 NC_004812.1 + 106097 0.67 0.894867
Target:  5'- -gGCGGUggagAGCAGCGCG-CGGGugagcgcCUCGg -3'
miRNA:   3'- gaCGCCG----UCGUCGUGCuGCUUu------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 145511 0.67 0.894867
Target:  5'- uCUGCaGGCucuuGUGGCugGGCG--GCUCGc -3'
miRNA:   3'- -GACG-CCGu---CGUCGugCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 71871 0.67 0.894867
Target:  5'- cCUGCaGgAGCGcgcGCACGGCGc-GCUCGg -3'
miRNA:   3'- -GACGcCgUCGU---CGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121157 0.67 0.894867
Target:  5'- -cGCGGCGcuGCAGCGCuGCGAGgGC-CGg -3'
miRNA:   3'- gaCGCCGU--CGUCGUGcUGCUU-UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 139785 0.67 0.894867
Target:  5'- -gGCGGCGGCcGCcgucuccuccuCGGCGggGgUCGa -3'
miRNA:   3'- gaCGCCGUCGuCGu----------GCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 137891 0.68 0.888113
Target:  5'- -cGCGGCGcccCAGCGCcGCGGAGCUa- -3'
miRNA:   3'- gaCGCCGUc--GUCGUGcUGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 48647 0.68 0.873922
Target:  5'- gUGCgGGCGGCuGUACGugGGccaucgccacuACUCGg -3'
miRNA:   3'- gACG-CCGUCGuCGUGCugCUu----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 14528 0.68 0.851005
Target:  5'- uUG-GGCGGCAGCugGgccGCGAccgcgggggcgGGCUCGu -3'
miRNA:   3'- gACgCCGUCGUCGugC---UGCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 30954 0.68 0.851005
Target:  5'- -cGCGggcGCGGCGGCGCGGCGccACgcgCGc -3'
miRNA:   3'- gaCGC---CGUCGUCGUGCUGCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 99574 0.68 0.88113
Target:  5'- gCUGgGGUcGCAGUcgguCGGCGggGcCUCGg -3'
miRNA:   3'- -GACgCCGuCGUCGu---GCUGCuuU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 94814 0.68 0.866495
Target:  5'- -cGCGGCGGUGGCugGA-GGugUUCGu -3'
miRNA:   3'- gaCGCCGUCGUCGugCUgCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 42182 0.68 0.888113
Target:  5'- -gGCGGCgAGCGGgccCugGGCGAGGCgUCu -3'
miRNA:   3'- gaCGCCG-UCGUC---GugCUGCUUUG-AGc -5'
21499 5' -54.8 NC_004812.1 + 37229 0.68 0.888113
Target:  5'- -cGCGGCcguuguGCAGCAUGGCGuuGAGCg-- -3'
miRNA:   3'- gaCGCCGu-----CGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 7925 0.68 0.866495
Target:  5'- gCUGCGGCGcGCgccGGCGCGGCcggGggGCgCGu -3'
miRNA:   3'- -GACGCCGU-CG---UCGUGCUG---CuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 147573 0.68 0.888113
Target:  5'- -cGCGGCcGC-GUACGGCauGGCUCGg -3'
miRNA:   3'- gaCGCCGuCGuCGUGCUGcuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 155734 0.68 0.888113
Target:  5'- gUG-GGgGGCGcGCGCgGGCGggGCUCGc -3'
miRNA:   3'- gACgCCgUCGU-CGUG-CUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 122360 0.68 0.873922
Target:  5'- -gGCGGgGGCcggggcgcggGGCGCGGCGGcccCUCGg -3'
miRNA:   3'- gaCGCCgUCG----------UCGUGCUGCUuu-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 94338 0.68 0.851005
Target:  5'- gUGCGGC-GCGGCcuGCG-CGggGCgggCGg -3'
miRNA:   3'- gACGCCGuCGUCG--UGCuGCuuUGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.