miRNA display CGI


Results 81 - 100 of 396 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 29923 0.72 0.649342
Target:  5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 46673 0.72 0.646252
Target:  5'- -gGgGGCAGCuccgcuccgauaugaGGCGCGACGgcGCUCu -3'
miRNA:   3'- gaCgCCGUCG---------------UCGUGCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 49810 0.72 0.693391
Target:  5'- cCUGCcgGGCAGcCAGCGCGugGggG-UCa -3'
miRNA:   3'- -GACG--CCGUC-GUCGUGCugCuuUgAGc -5'
21499 5' -54.8 NC_004812.1 + 87127 0.72 0.693391
Target:  5'- uCUGgguuCGGCGGCGGCGCGccaggGCGu-GCUCGg -3'
miRNA:   3'- -GAC----GCCGUCGUCGUGC-----UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 48299 0.72 0.642129
Target:  5'- -cGCGGCGGUGGC-CGAgGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUgCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 109720 0.72 0.671954
Target:  5'- -gGCGGCcgcgcugGGCAgGCGCGACGAGA-UCGa -3'
miRNA:   3'- gaCGCCG-------UCGU-CGUGCUGCUUUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 3909 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 80274 0.72 0.662718
Target:  5'- -gGCGGUGGCGGUGCGGCGGGAg--- -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCUUUgagc -5'
21499 5' -54.8 NC_004812.1 + 4045 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 89323 0.72 0.662718
Target:  5'- uCUGCGGCgccggGGCccGGCcCGACGcgGAGCUCGg -3'
miRNA:   3'- -GACGCCG-----UCG--UCGuGCUGC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 116331 0.72 0.642129
Target:  5'- cCUGCuGGCGGCGGCGC-AgGAGACcuUCGg -3'
miRNA:   3'- -GACG-CCGUCGUCGUGcUgCUUUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 15204 0.72 0.642129
Target:  5'- gCUGCGGCAGgcgcgcucCAGCACGGCGuaguACaCGg -3'
miRNA:   3'- -GACGCCGUC--------GUCGUGCUGCuu--UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 74062 0.71 0.703523
Target:  5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5'
21499 5' -54.8 NC_004812.1 + 155290 0.71 0.743348
Target:  5'- -aGgGGCGG-GGCGCGGCGggGCcCGg -3'
miRNA:   3'- gaCgCCGUCgUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 128705 0.71 0.743348
Target:  5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3'
miRNA:   3'- gacgCCGUCGUCGUGCUGCuUUGagc -5'
21499 5' -54.8 NC_004812.1 + 19703 0.71 0.743348
Target:  5'- -gGCGGCGcGCGGCGcCGGCGAccGGCcgUCGg -3'
miRNA:   3'- gaCGCCGU-CGUCGU-GCUGCU--UUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 128074 0.71 0.743348
Target:  5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 37678 0.71 0.747254
Target:  5'- -gGgGGCAGCAGCGCcgcgucccgcaucagGugGuuGAGCUCGg -3'
miRNA:   3'- gaCgCCGUCGUCGUG---------------CugC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 117388 0.71 0.74139
Target:  5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 123128 0.71 0.733517
Target:  5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.