Results 101 - 120 of 396 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 5' | -54.8 | NC_004812.1 | + | 19703 | 0.71 | 0.743348 |
Target: 5'- -gGCGGCGcGCGGCGcCGGCGAccGGCcgUCGg -3' miRNA: 3'- gaCGCCGU-CGUCGU-GCUGCU--UUG--AGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128074 | 0.71 | 0.743348 |
Target: 5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3' miRNA: 3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 117388 | 0.71 | 0.74139 |
Target: 5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 123128 | 0.71 | 0.733517 |
Target: 5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3' miRNA: 3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 82111 | 0.71 | 0.733517 |
Target: 5'- -gGCGGaCAGCAGCgccgACGACGGggUggCGg -3' miRNA: 3'- gaCGCC-GUCGUCG----UGCUGCUuuGa-GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 154029 | 0.71 | 0.733517 |
Target: 5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3' miRNA: 3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 2566 | 0.71 | 0.743348 |
Target: 5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3' miRNA: 3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 91219 | 0.71 | 0.713594 |
Target: 5'- gUGUGGCAGC-GCACGAagagggccaGGAACUgGg -3' miRNA: 3'- gACGCCGUCGuCGUGCUg--------CUUUGAgC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 92928 | 0.71 | 0.713594 |
Target: 5'- -gGCGGaGGCgGGgGCGACGGAGCUCc -3' miRNA: 3'- gaCGCCgUCG-UCgUGCUGCUUUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 98430 | 0.71 | 0.723596 |
Target: 5'- gUGCGGCGGCcGCGgGGCGGcaGGCgCGg -3' miRNA: 3'- gACGCCGUCGuCGUgCUGCU--UUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 115435 | 0.71 | 0.703523 |
Target: 5'- -aGCGacguuGgGGCGGCGCGcCGggGCUCGa -3' miRNA: 3'- gaCGC-----CgUCGUCGUGCuGCuuUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 88304 | 0.71 | 0.703523 |
Target: 5'- uCUGCGGCgAGCuGCugGugGcGugUCa -3' miRNA: 3'- -GACGCCG-UCGuCGugCugCuUugAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 107420 | 0.71 | 0.703523 |
Target: 5'- gUGCGGCcaggcccaccGGCcGCGCGGCGGccgucgcgGACUCGc -3' miRNA: 3'- gACGCCG----------UCGuCGUGCUGCU--------UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 74062 | 0.71 | 0.703523 |
Target: 5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3' miRNA: 3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 122907 | 0.71 | 0.703523 |
Target: 5'- -cGCGGUAGCGGC-CGACGGccgcGACgcCGg -3' miRNA: 3'- gaCGCCGUCGUCGuGCUGCU----UUGa-GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 116472 | 0.71 | 0.71259 |
Target: 5'- -cGCGGCGGCGGauagcuucgcCGCGGCGGccaacuuuugccuGGCUCGc -3' miRNA: 3'- gaCGCCGUCGUC----------GUGCUGCU-------------UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3196 | 0.71 | 0.743348 |
Target: 5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3' miRNA: 3'- gacgCCGUCGUCGUGCUGCuUUGagc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 38371 | 0.71 | 0.713594 |
Target: 5'- cCUGCaGGCgGGCGGCGgGGCccgccgGGAGCUCGg -3' miRNA: 3'- -GACG-CCG-UCGUCGUgCUG------CUUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 148289 | 0.71 | 0.74139 |
Target: 5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 155090 | 0.71 | 0.722599 |
Target: 5'- -gGCGGCGGCAugcccucGCGCGGCGgcGCgggcCGg -3' miRNA: 3'- gaCGCCGUCGU-------CGUGCUGCuuUGa---GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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