miRNA display CGI


Results 41 - 60 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 2778 0.74 0.549982
Target:  5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3'
miRNA:   3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 54759 0.74 0.549982
Target:  5'- -gGgGGCGGUGGaCACGGCGgcGCUCGu -3'
miRNA:   3'- gaCgCCGUCGUC-GUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 79332 0.74 0.549982
Target:  5'- -aGCGGa--CGGUGCGGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCgucGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128149 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 2641 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 123564 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 154465 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 57785 0.74 0.570231
Target:  5'- -cGUGGUucgaGGCGGCgcugGCGACGGAGCUCu -3'
miRNA:   3'- gaCGCCG----UCGUCG----UGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 29916 0.74 0.570231
Target:  5'- -gGUGGCGGCGGCgACGGCGAcGGCgCGa -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCU-UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 150580 0.74 0.580426
Target:  5'- -cGCGGCGGCgGGCuccuCGACGggGCggCGc -3'
miRNA:   3'- gaCGCCGUCG-UCGu---GCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 25071 0.74 0.580426
Target:  5'- -cGCGGCGGCgGGCuccuCGACGggGCggCGc -3'
miRNA:   3'- gaCGCCGUCG-UCGu---GCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 25637 0.74 0.580426
Target:  5'- -aGCGGaaCAGCAGCGCGcggGCGGccGGCUCGu -3'
miRNA:   3'- gaCGCC--GUCGUCGUGC---UGCU--UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 155424 0.74 0.584515
Target:  5'- -gGUGGCGGCGGCgacggcgacgGCGACGAGggagcggggggccggGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCG----------UGCUGCUU---------------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 47879 0.73 0.589633
Target:  5'- cCUGCagcaGGUAGUAGCGCGccacggcACGAGGCUCu -3'
miRNA:   3'- -GACG----CCGUCGUCGUGC-------UGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 95606 0.73 0.590658
Target:  5'- -cGCGGCAGCAGCaACGGCaccgggccGGGCUCc -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGc-------UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 13279 0.73 0.590658
Target:  5'- -gGCGGCGGaggccuCGGCGCGGCGggGCguccgCGu -3'
miRNA:   3'- gaCGCCGUC------GUCGUGCUGCuuUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 107664 0.73 0.600921
Target:  5'- -gGCGGcCGGCAGCACGccgugGCGGAGCagCGu -3'
miRNA:   3'- gaCGCC-GUCGUCGUGC-----UGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 75822 0.73 0.600921
Target:  5'- -aGCGGCGGCAGCGCcggGugGugcugguCUCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUG---CugCuuu----GAGC- -5'
21499 5' -54.8 NC_004812.1 + 46588 0.73 0.610177
Target:  5'- -cGCGGCcggguagcacaggAGCGGCGCGACGGggUggCGa -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCUuuGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 41880 0.73 0.611207
Target:  5'- gCUGCGGCAGUGGCAgugguaGACGAcGC-CGu -3'
miRNA:   3'- -GACGCCGUCGUCGUg-----CUGCUuUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.