miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 41880 0.73 0.611207
Target:  5'- gCUGCGGCAGUGGCAgugguaGACGAcGC-CGu -3'
miRNA:   3'- -GACGCCGUCGUCGUg-----CUGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 138526 0.73 0.621509
Target:  5'- gUGCGGCGGCccGgACGGCG--GCUCGg -3'
miRNA:   3'- gACGCCGUCGu-CgUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 53004 0.73 0.621509
Target:  5'- -gGCGGCuGUAGCACGuccCGggGCgcgCGg -3'
miRNA:   3'- gaCGCCGuCGUCGUGCu--GCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 39281 0.73 0.621509
Target:  5'- -gGCaGCAGCAGCGCcaggGGCGggGCUUu -3'
miRNA:   3'- gaCGcCGUCGUCGUG----CUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 98583 0.73 0.625632
Target:  5'- uCUGCGaGCAGCuGCGCGgcaucaucgccgaggGCGggGCgUCGg -3'
miRNA:   3'- -GACGC-CGUCGuCGUGC---------------UGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 67209 0.73 0.631819
Target:  5'- -cGCGGCGGCGGCGCccGCG-GGCUCc -3'
miRNA:   3'- gaCGCCGUCGUCGUGc-UGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 55343 0.73 0.631819
Target:  5'- gCUGCGGCGGCAGUucgcccgccUGACGgcGCUgCGg -3'
miRNA:   3'- -GACGCCGUCGUCGu--------GCUGCuuUGA-GC- -5'
21499 5' -54.8 NC_004812.1 + 60065 0.73 0.631819
Target:  5'- -cGCGaCAGCGGCAgGGCGGAGCgcacgCGg -3'
miRNA:   3'- gaCGCcGUCGUCGUgCUGCUUUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 116331 0.72 0.642129
Target:  5'- cCUGCuGGCGGCGGCGC-AgGAGACcuUCGg -3'
miRNA:   3'- -GACG-CCGUCGUCGUGcUgCUUUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 48299 0.72 0.642129
Target:  5'- -cGCGGCGGUGGC-CGAgGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUgCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 15204 0.72 0.642129
Target:  5'- gCUGCGGCAGgcgcgcucCAGCACGGCGuaguACaCGg -3'
miRNA:   3'- -GACGCCGUC--------GUCGUGCUGCuu--UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 46673 0.72 0.646252
Target:  5'- -gGgGGCAGCuccgcuccgauaugaGGCGCGACGgcGCUCu -3'
miRNA:   3'- gaCgCCGUCG---------------UCGUGCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 29923 0.72 0.649342
Target:  5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 64151 0.72 0.662718
Target:  5'- -cGgGGaCGGCGGCGCGGCG-GGCUCc -3'
miRNA:   3'- gaCgCC-GUCGUCGUGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 129554 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 129417 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 80274 0.72 0.662718
Target:  5'- -gGCGGUGGCGGUGCGGCGGGAg--- -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCUUUgagc -5'
21499 5' -54.8 NC_004812.1 + 3909 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 89323 0.72 0.662718
Target:  5'- uCUGCGGCgccggGGCccGGCcCGACGcgGAGCUCGg -3'
miRNA:   3'- -GACGCCG-----UCG--UCGuGCUGC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 4045 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.