miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 109720 0.72 0.671954
Target:  5'- -gGCGGCcgcgcugGGCAgGCGCGACGAGA-UCGa -3'
miRNA:   3'- gaCGCCG-------UCGU-CGUGCUGCUUUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 44295 0.72 0.671954
Target:  5'- -cGCGGcCAGCcgcccgaGGCGCGACucGAGCUCGg -3'
miRNA:   3'- gaCGCC-GUCG-------UCGUGCUGc-UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 90492 0.72 0.672979
Target:  5'- -cGCGGCGGCGGCGCcuGCGAcccccgccuGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGUGc-UGCUu--------UGAGc -5'
21499 5' -54.8 NC_004812.1 + 105827 0.72 0.672979
Target:  5'- -gGcCGGCGGCGGCGCGGgGuucauCUCGg -3'
miRNA:   3'- gaC-GCCGUCGUCGUGCUgCuuu--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 23498 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 149006 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 127672 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 2163 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 56755 0.72 0.683206
Target:  5'- cCUGCGGCAGC-GCucCGACGAG-CUg- -3'
miRNA:   3'- -GACGCCGUCGuCGu-GCUGCUUuGAgc -5'
21499 5' -54.8 NC_004812.1 + 19597 0.72 0.693391
Target:  5'- -gGgGGCuuGCAGcCGCGGCGAAucGCUCGc -3'
miRNA:   3'- gaCgCCGu-CGUC-GUGCUGCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 87127 0.72 0.693391
Target:  5'- uCUGgguuCGGCGGCGGCGCGccaggGCGu-GCUCGg -3'
miRNA:   3'- -GAC----GCCGUCGUCGUGC-----UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 49810 0.72 0.693391
Target:  5'- cCUGCcgGGCAGcCAGCGCGugGggG-UCa -3'
miRNA:   3'- -GACG--CCGUC-GUCGUGCugCuuUgAGc -5'
21499 5' -54.8 NC_004812.1 + 74062 0.71 0.703523
Target:  5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5'
21499 5' -54.8 NC_004812.1 + 107420 0.71 0.703523
Target:  5'- gUGCGGCcaggcccaccGGCcGCGCGGCGGccgucgcgGACUCGc -3'
miRNA:   3'- gACGCCG----------UCGuCGUGCUGCU--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128318 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 2810 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 115435 0.71 0.703523
Target:  5'- -aGCGacguuGgGGCGGCGCGcCGggGCUCGa -3'
miRNA:   3'- gaCGC-----CgUCGUCGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 122907 0.71 0.703523
Target:  5'- -cGCGGUAGCGGC-CGACGGccgcGACgcCGg -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUGCU----UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 88304 0.71 0.703523
Target:  5'- uCUGCGGCgAGCuGCugGugGcGugUCa -3'
miRNA:   3'- -GACGCCG-UCGuCGugCugCuUugAGc -5'
21499 5' -54.8 NC_004812.1 + 116472 0.71 0.71259
Target:  5'- -cGCGGCGGCGGauagcuucgcCGCGGCGGccaacuuuugccuGGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUC----------GUGCUGCU-------------UUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.