miRNA display CGI


Results 121 - 140 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 3196 0.71 0.743348
Target:  5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3'
miRNA:   3'- gacgCCGUCGUCGUGCUGCuUUGagc -5'
21499 5' -54.8 NC_004812.1 + 2566 0.71 0.743348
Target:  5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 81366 0.71 0.743348
Target:  5'- -cGCGccaaGCAGCAGCGCGcCGAGGC-Ca -3'
miRNA:   3'- gaCGC----CGUCGUCGUGCuGCUUUGaGc -5'
21499 5' -54.8 NC_004812.1 + 37678 0.71 0.747254
Target:  5'- -gGgGGCAGCAGCGCcgcgucccgcaucagGugGuuGAGCUCGg -3'
miRNA:   3'- gaCgCCGUCGUCGUG---------------CugC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 141588 0.7 0.753081
Target:  5'- -gGCGGCguugAGCAGCGCGcCGAAGaccgCGg -3'
miRNA:   3'- gaCGCCG----UCGUCGUGCuGCUUUga--GC- -5'
21499 5' -54.8 NC_004812.1 + 94549 0.7 0.753081
Target:  5'- cCUGuCGGCGGCccuGGU--GGCGggGCUCGg -3'
miRNA:   3'- -GAC-GCCGUCG---UCGugCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 98712 0.7 0.753081
Target:  5'- -gGgGGCGGCGGCGCGGgGucguuCUCGc -3'
miRNA:   3'- gaCgCCGUCGUCGUGCUgCuuu--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 148190 0.7 0.753081
Target:  5'- -gGCGGCGGCcuccGGUACGGcCGggGC-CGa -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 77043 0.7 0.753081
Target:  5'- -gGCGcGCAcGC-GCGCGGCGAGgcGCUCGc -3'
miRNA:   3'- gaCGC-CGU-CGuCGUGCUGCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 117289 0.7 0.753081
Target:  5'- -gGCGGCGGCcuccGGUACGGcCGggGC-CGa -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 94288 0.7 0.753081
Target:  5'- -aGCGcGCGG-GGCGCGACGAAGCg-- -3'
miRNA:   3'- gaCGC-CGUCgUCGUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 48235 0.7 0.75887
Target:  5'- -cGCGGCccagggccuccuGCAGCGCGGCGAcgucguccgcgcGCUCGa -3'
miRNA:   3'- gaCGCCGu-----------CGUCGUGCUGCUu-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 103250 0.7 0.762707
Target:  5'- -aGCGGCGGCcGgGCGACGcgGCggCGa -3'
miRNA:   3'- gaCGCCGUCGuCgUGCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 2487 0.7 0.762707
Target:  5'- -gGCGGCGGCGGCcucGCGgGCGGgcGAgUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG---UGC-UGCU--UUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 127995 0.7 0.762707
Target:  5'- -gGCGGCGGCGGCcucGCGgGCGGgcGAgUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG---UGC-UGCU--UUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 59707 0.7 0.762707
Target:  5'- -aGCGGCGGCga-GCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGucgUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 115169 0.7 0.762707
Target:  5'- aCUGCGGgGGCGGCA-GACGGAGu--- -3'
miRNA:   3'- -GACGCCgUCGUCGUgCUGCUUUgagc -5'
21499 5' -54.8 NC_004812.1 + 7536 0.7 0.766524
Target:  5'- -gGCGGCgaugcgcggggacggGGgAGCGCGGgGAGACUCu -3'
miRNA:   3'- gaCGCCG---------------UCgUCGUGCUgCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 38437 0.7 0.766524
Target:  5'- -gGCGGCgaugcgcggggacggGGgAGCGCGGgGAGACUCu -3'
miRNA:   3'- gaCGCCG---------------UCgUCGUGCUgCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 10742 0.7 0.771269
Target:  5'- -gGCGGCaacGGCGGCgACGcgccugcGCGAGACUCc -3'
miRNA:   3'- gaCGCCG---UCGUCG-UGC-------UGCUUUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.