miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 148528 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 98739 0.66 0.930406
Target:  5'- -cGCGGgGGCAGCgcccccggcgGCGACGAcaggaGGCgcagCGa -3'
miRNA:   3'- gaCGCCgUCGUCG----------UGCUGCU-----UUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 36160 0.66 0.925086
Target:  5'- -gGCGGCgcagGGguGCGCGGgGucGCUCu -3'
miRNA:   3'- gaCGCCG----UCguCGUGCUgCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 18853 0.66 0.925086
Target:  5'- --cCGGUGGCGGUACuGCGAAACgaggCGg -3'
miRNA:   3'- gacGCCGUCGUCGUGcUGCUUUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 56584 0.66 0.925086
Target:  5'- -cGCGGCcgccauGCAGCgacgaucgcGCGGCGcGAGCUCc -3'
miRNA:   3'- gaCGCCGu-----CGUCG---------UGCUGC-UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 55887 0.66 0.925086
Target:  5'- gUGUGGUcGUAGCACGcGCGGAugagggcCUCGa -3'
miRNA:   3'- gACGCCGuCGUCGUGC-UGCUUu------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 37399 0.66 0.925086
Target:  5'- gUGCaGCAGCGGCcGCG-CGAGAaggCGg -3'
miRNA:   3'- gACGcCGUCGUCG-UGCuGCUUUga-GC- -5'
21499 5' -54.8 NC_004812.1 + 151289 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 135608 0.67 0.919523
Target:  5'- -cGCGGCcgaggcgcGGCGGCgACGACGucgUUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCG-UGCUGCuuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 64585 0.67 0.919523
Target:  5'- -cGgGGguGCAGCACGGCcu-GCUg- -3'
miRNA:   3'- gaCgCCguCGUCGUGCUGcuuUGAgc -5'
21499 5' -54.8 NC_004812.1 + 100789 0.67 0.919523
Target:  5'- gUGCGGUGGCGGCcuCGGgccCGAAGacCUCGu -3'
miRNA:   3'- gACGCCGUCGUCGu-GCU---GCUUU--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 89275 0.67 0.919523
Target:  5'- -cGCaGGCcGCGGCGCGgcGCGGAGCccCGg -3'
miRNA:   3'- gaCG-CCGuCGUCGUGC--UGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 136441 0.67 0.919523
Target:  5'- -gGCGGCccGGCGGCACcgcaGGCGAAuccGCgCGg -3'
miRNA:   3'- gaCGCCG--UCGUCGUG----CUGCUU---UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 2229 0.67 0.919523
Target:  5'- -cGCGGCccAGCGcacGCGCGGCGcgGCggCGg -3'
miRNA:   3'- gaCGCCG--UCGU---CGUGCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 114480 0.67 0.919523
Target:  5'- -cGUGGCcgccgggggaagGGCGGCggGCGACGGcgGACUCc -3'
miRNA:   3'- gaCGCCG------------UCGUCG--UGCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 41139 0.67 0.919523
Target:  5'- -cGCGGCcGCAcgcGCGCGGCGAGcCcagCGg -3'
miRNA:   3'- gaCGCCGuCGU---CGUGCUGCUUuGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 25781 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 96760 0.67 0.919523
Target:  5'- gUGCGGCGcGCcGuCGCGAgGAGGCggCGg -3'
miRNA:   3'- gACGCCGU-CGuC-GUGCUgCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 92503 0.67 0.919523
Target:  5'- -gGCGGCGGCccGGCuuccgggguccgGCGACGAu-UUCGa -3'
miRNA:   3'- gaCGCCGUCG--UCG------------UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121973 0.67 0.917807
Target:  5'- -aGCGGCgGGCcugggcugggccugAGCGCcgGGCGGGACUUGg -3'
miRNA:   3'- gaCGCCG-UCG--------------UCGUG--CUGCUUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.