miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 152874 0.67 0.917807
Target:  5'- -aGCGGCgGGCcugggcugggccugAGCGCcgGGCGGGACUUGg -3'
miRNA:   3'- gaCGCCG-UCG--------------UCGUG--CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 109321 0.67 0.916069
Target:  5'- -gGCGGCgcuggaGGCGGCGCcGCGcuaccggggcgccguAGACUCGg -3'
miRNA:   3'- gaCGCCG------UCGUCGUGcUGC---------------UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 21221 0.67 0.913718
Target:  5'- -aGCGGCAGaAGUcucgcgGCGACGGGAcCUCc -3'
miRNA:   3'- gaCGCCGUCgUCG------UGCUGCUUU-GAGc -5'
21499 5' -54.8 NC_004812.1 + 50441 0.67 0.913718
Target:  5'- cCUGCGGCgcgaGGCcGC-CGAgGccGAGCUCGg -3'
miRNA:   3'- -GACGCCG----UCGuCGuGCUgC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 146428 0.67 0.913718
Target:  5'- -cGgGGCAGCAGUugcgaaccGCGGCGAggAugUUGc -3'
miRNA:   3'- gaCgCCGUCGUCG--------UGCUGCU--UugAGC- -5'
21499 5' -54.8 NC_004812.1 + 35581 0.67 0.913718
Target:  5'- -gGCGGCGGgGGCAccCGACGGcGAC-CGc -3'
miRNA:   3'- gaCGCCGUCgUCGU--GCUGCU-UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 115805 0.67 0.913718
Target:  5'- -aGCGGCAGCcGUugugaGGCGAGGCggcCGg -3'
miRNA:   3'- gaCGCCGUCGuCGug---CUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 119492 0.67 0.913718
Target:  5'- -cGCGGCGGCAgGgGCGGCGuccg-CGg -3'
miRNA:   3'- gaCGCCGUCGU-CgUGCUGCuuugaGC- -5'
21499 5' -54.8 NC_004812.1 + 150393 0.67 0.913718
Target:  5'- -cGCGGCGGCAgGgGCGGCGuccg-CGg -3'
miRNA:   3'- gaCGCCGUCGU-CgUGCUGCuuugaGC- -5'
21499 5' -54.8 NC_004812.1 + 32498 0.67 0.913124
Target:  5'- -gGCGGCguaccgcguugucGGCGGCACGA----GCUCGu -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUgcuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 71136 0.67 0.910119
Target:  5'- -cGCGGCGGCAGCugGcucuugaucacguacACGcagcacAGCUCc -3'
miRNA:   3'- gaCGCCGUCGUCGugC---------------UGCu-----UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 17530 0.67 0.910119
Target:  5'- -cGCGGCGGaaGGgGCGACGGucggggcggacgcugGGCUCGc -3'
miRNA:   3'- gaCGCCGUCg-UCgUGCUGCU---------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 38643 0.67 0.910119
Target:  5'- -aGCGGgggguugaacagcccCAGgGGCAUGACGAAGgUCa -3'
miRNA:   3'- gaCGCC---------------GUCgUCGUGCUGCUUUgAGc -5'
21499 5' -54.8 NC_004812.1 + 87843 0.67 0.907672
Target:  5'- -cGCGaGCAGCucggcgugcgcGCACGACGGcgUUCGc -3'
miRNA:   3'- gaCGC-CGUCGu----------CGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 109863 0.67 0.907672
Target:  5'- -gGCGGCAGUGGCaAUGGCcagcGCUCa -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGcuu-UGAGc -5'
21499 5' -54.8 NC_004812.1 + 130857 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 145313 0.67 0.907672
Target:  5'- -cGCGGCGccccgcGCGGCGCGccucguggGCGu-GCUCGg -3'
miRNA:   3'- gaCGCCGU------CGUCGUGC--------UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 106589 0.67 0.907672
Target:  5'- -gGC-GCAGaCGGCGCGAUGGAGuCUCc -3'
miRNA:   3'- gaCGcCGUC-GUCGUGCUGCUUU-GAGc -5'
21499 5' -54.8 NC_004812.1 + 5349 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 155816 0.67 0.901388
Target:  5'- -gGCGGCGGCgGGgGCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCG-UCgUGCUGCUuu---GAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.