miRNA display CGI


Results 101 - 120 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 98241 0.67 0.901388
Target:  5'- -cGCGG-GGCGGCGCGGCccugGAGGC-CGg -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUG----CUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 27432 0.67 0.901388
Target:  5'- uUGCaGGgagaagccCAGUAGCACGAUGAGGC-CGc -3'
miRNA:   3'- gACG-CC--------GUCGUCGUGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 77440 0.67 0.901388
Target:  5'- -aGCucccGCAGCAGCuCGGCcggGggGCUCGu -3'
miRNA:   3'- gaCGc---CGUCGUCGuGCUG---CuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 88727 0.67 0.901388
Target:  5'- gCUGCGcCAG-AGCAUGAUGAAGCaCGg -3'
miRNA:   3'- -GACGCcGUCgUCGUGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 6839 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 37740 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 87726 0.67 0.901388
Target:  5'- -aGCGGgaGGCGGCGCGGgcgcCGggGCcgCGg -3'
miRNA:   3'- gaCGCCg-UCGUCGUGCU----GCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 155816 0.67 0.901388
Target:  5'- -gGCGGCGGCgGGgGCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCG-UCgUGCUGCUuu---GAGc -5'
21499 5' -54.8 NC_004812.1 + 148424 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 22916 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 124915 0.67 0.901388
Target:  5'- -gGCGGCGGCGGgGgCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCGUCgU-GCUGCUuu---GAGc -5'
21499 5' -54.8 NC_004812.1 + 110972 0.67 0.901388
Target:  5'- cCUGCGGUucaAGCACGgGCGGAACa-- -3'
miRNA:   3'- -GACGCCGucgUCGUGC-UGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 81946 0.67 0.901388
Target:  5'- -gGCGGC-GCGGCACGugGuccGCagGg -3'
miRNA:   3'- gaCGCCGuCGUCGUGCugCuu-UGagC- -5'
21499 5' -54.8 NC_004812.1 + 73927 0.67 0.901388
Target:  5'- -gGCuGGCGGUGGCGC-ACGAAGCgccCGa -3'
miRNA:   3'- gaCG-CCGUCGUCGUGcUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 24844 0.67 0.901388
Target:  5'- -cGCGGCacgcgccgcgGGCGGCGCGgcuGCGggGgcgucCUCGa -3'
miRNA:   3'- gaCGCCG----------UCGUCGUGC---UGCuuU-----GAGC- -5'
21499 5' -54.8 NC_004812.1 + 43626 0.67 0.894867
Target:  5'- -gGCGGCcGCGGCGCcGCGAuccaUCGc -3'
miRNA:   3'- gaCGCCGuCGUCGUGcUGCUuug-AGC- -5'
21499 5' -54.8 NC_004812.1 + 9089 0.67 0.894867
Target:  5'- ---aGGCGGCGGCGCGAagaCGGcgcCUCGg -3'
miRNA:   3'- gacgCCGUCGUCGUGCU---GCUuu-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 106097 0.67 0.894867
Target:  5'- -gGCGGUggagAGCAGCGCG-CGGGugagcgcCUCGg -3'
miRNA:   3'- gaCGCCG----UCGUCGUGCuGCUUu------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 121157 0.67 0.894867
Target:  5'- -cGCGGCGcuGCAGCGCuGCGAGgGC-CGg -3'
miRNA:   3'- gaCGCCGU--CGUCGUGcUGCUU-UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 128222 0.67 0.894867
Target:  5'- -cGCGGCcggaGGcCAGCACGGCGcgGCg-- -3'
miRNA:   3'- gaCGCCG----UC-GUCGUGCUGCuuUGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.